MmuEX1029218 @ mm10
Exon Skipping
Gene
ENSMUSG00000048264 | Dip2c
Description
disco interacting protein 2 homolog C [Source:MGI Symbol;Acc:MGI:1920179]
Coordinates
chr13:9621879-9623868:+
Coord C1 exon
chr13:9621879-9622002
Coord A exon
chr13:9622582-9622703
Coord C2 exon
chr13:9623757-9623868
Length
122 bp
Sequences
Splice sites
3' ss Seq
TCTGCTTTCCTCTTGTGTAGGAA
3' ss Score
10.9
5' ss Seq
GAGGTAACC
5' ss Score
8.55
Exon sequences
Seq C1 exon
GGAACAATAGCAAATTCCTTGACATGTGTTCAACTACACAAGCGTGCAGAAAAGATAGCAGTGATGCTGATGGAGAGGGGCCACCTGCAGGACGGAGACCATGTGGCATTAGTCTACCCTCCAG
Seq A exon
GAATAGACCTTATCGCTGCATTTTATGGTTGCCTATATGCAGGCTGTGTGCCAATTACCGTGCGACCTCCACATCCACAGAACATTGCAACGACATTGCCTACAGTCAAGATGATCGTAGAG
Seq C2 exon
GTGAGTCGATCTGCTTGTCTCATGACAACACAACTGATATGTAAACTGCTTCGGTCCAGAGAGGCAGCAGCAGCTGTAGATGTCAGGACATGGCCCCTCATACTGGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048264-'45-43,'45-40,46-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.6=100)
A:
PF0050123=AMP-binding=FE(8.4=100)
C2:
PF0050123=AMP-binding=FE(7.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACAATAGCAAATTCCTTGACA
R:
GTGTCCAGTATGAGGGGCCAT
Band lengths:
234-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types