HsaEX6087280 @ hg19
Exon Skipping
Gene
ENSG00000151240 | DIP2C
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:HGNC Symbol;Acc:29150]
Coordinates
chr10:390939-395394:-
Coord C1 exon
chr10:395271-395394
Coord A exon
chr10:394581-394702
Coord C2 exon
chr10:390939-391050
Length
122 bp
Sequences
Splice sites
3' ss Seq
ATGTTTCTCTCCTTGTGTAGGAA
3' ss Score
10.94
5' ss Seq
GAGGTAACA
5' ss Score
8.1
Exon sequences
Seq C1 exon
GGTGCGATAGCGAACTCGCTGACCTGCGTGCAGCTGCACAAGAGAGCTGAGAAGATCGCCGTGATGCTGATGGAGAGGGGCCACCTTCAGGACGGCGACCACGTGGCCTTGGTCTACCCCCCAG
Seq A exon
GAATAGACCTGATAGCAGCGTTTTATGGTTGCCTGTACGCAGGCTGTGTGCCAATAACCGTCCGTCCCCCGCACCCACAGAACATCGCGACGACGTTGCCTACCGTCAAGATGATTGTGGAG
Seq C2 exon
GTGAGTCGCTCTGCCTGTCTGATGACGACACAGCTGATCTGTAAGTTGCTGCGGTCCAGGGAGGCGGCGGCGGCTGTGGACGTCAGGACGTGGCCCCTCATCCTGGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151240-'31-34,'31-32,32-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.7=100)
A:
PF0050123=AMP-binding=FE(11.5=100)
C2:
PF0050123=AMP-binding=FE(10.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGCACAAGAGAGCTGAG
R:
CTGTGTCCAGGATGAGGGGC
Band lengths:
206-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)