GgaEX0009496 @ galGal3
Exon Skipping
Gene
ENSGALG00000006652 | DIP2C
Description
NA
Coordinates
chr2:9909113-9912871:-
Coord C1 exon
chr2:9912748-9912871
Coord A exon
chr2:9911002-9911123
Coord C2 exon
chr2:9909113-9909224
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTGTTCTTCATGCAGGAA
3' ss Score
10.07
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GGAACAATAGCCAACTCATTAACATGTGTCCAGCTACATAAGCGAGCAGAGAAGATAGCCGTCATGCTGATGGAAAGGGGGCATTTGCAAGATGGAGACCATGTGGCTTTGGTTTACCCACCAG
Seq A exon
GAATAGACCTGATTGCCGCATTTTATGGTTGCCTGTATGCAGGCTGTGTGCCAATAACAGTTCGACCTCCACATCCCCAGAACATAGCGACAACGTTACCTACAGTGAAGATGATTGTGGAG
Seq C2 exon
GTGAGCCGCTCTGCTTGCTTAATGACTACACAATTAATATGTAAATTGTTACGGTCGCGAGAGGCGGCAGCGGCAGTGGATGTCAGAACGTGGCCTCCAGTACTAGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006652-'24-27,'24-26,25-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.6=100)
A:
PF0050123=AMP-binding=FE(8.4=100)
C2:
PF0050123=AMP-binding=FE(7.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACAATAGCCAACTCATTAACA
R:
GTATCTAGTACTGGAGGCCACGT
Band lengths:
234-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]