GgaEX0009496 @ galGal4
Exon Skipping
Gene
ENSGALG00000006652 | DIP2C
Description
disco-interacting protein 2 homolog C [Source:HGNC Symbol;Acc:HGNC:29150]
Coordinates
chr2:9949490-9953248:-
Coord C1 exon
chr2:9953125-9953248
Coord A exon
chr2:9951379-9951500
Coord C2 exon
chr2:9949490-9949601
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTGTTCTTCATGCAGGAA
3' ss Score
10.07
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GGAACAATAGCCAACTCATTAACATGTGTCCAGCTACATAAGCGAGCAGAGAAGATAGCCGTCATGCTGATGGAAAGGGGGCATTTGCAAGATGGAGACCATGTGGCTTTGGTTTACCCACCAG
Seq A exon
GAATAGACCTGATTGCCGCATTTTATGGTTGCCTGTATGCAGGCTGTGTGCCAATAACAGTTCGACCTCCACATCCCCAGAACATAGCGACAACGTTACCTACAGTGAAGATGATTGTGGAG
Seq C2 exon
GTGAGCCGCTCTGCTTGCTTAATGACTACACAATTAATATGTAAATTGTTACGGTCGCGAGAGGCGGCAGCGGCAGTGGATGTCAGAACGTGGCCTCCAGTACTAGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006652-'27-29,'27-27,28-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(36.0=100)
A:
PF0050123=AMP-binding=FE(35.1=100)
C2:
PF0050123=AMP-binding=FE(7.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACAATAGCCAACTCATTAACA
R:
GTATCTAGTACTGGAGGCCACGT
Band lengths:
234-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]