DreINT0008826 @ danRer10
Intron Retention
Gene
ENSDARG00000014592 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr21:8363351-8363606:+
Coord C1 exon
chr21:8363351-8363407
Coord A exon
chr21:8363408-8363489
Coord C2 exon
chr21:8363490-8363606
Length
82 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTC
5' ss Score
7.46
3' ss Seq
TGTCACTGAATCTCTTGCAGGAG
3' ss Score
9.42
Exon sequences
Seq C1 exon
GCCAAAGACCATGCCAAGATGGGCATCAAAGAAGTCAAGAGTCGACTCAAACAAAAG
Seq A exon
GTACTCATTTCAGTAAATAAATCAATTATTTATAAGTACTGCATAAACACACACCCATTCACTGTCACTGAATCTCTTGCAG
Seq C2 exon
GAGCTTACAGAGAACGGCTACTCAGAAGAGCCCGGGCCCACTCAGCTTCCCTCCACACAGAGCAAAGACTCCCTCACCTGGGACCAGAGGCGGCCAATCACAGTTCACTTTGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014592:ENSDART00000143151:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.526 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAAGACCATGCCAAGATG
R:
AAGTGAACTGTGATTGGCCGC
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]