MmuINT0048203 @ mm10
Intron Retention
Gene
ENSMUSG00000035392 | Dennd1a
Description
DENN/MADD domain containing 1A [Source:MGI Symbol;Acc:MGI:2442794]
Coordinates
chr2:37844777-37852452:-
Coord C1 exon
chr2:37852396-37852452
Coord A exon
chr2:37844909-37852395
Coord C2 exon
chr2:37844777-37844908
Length
7487 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTT
5' ss Score
8.4
3' ss Seq
AGACCTTCCTTCTTCCATAGGAC
3' ss Score
10.63
Exon sequences
Seq C1 exon
GCAAAAGATCATGCAAAAATGGGAATAAAGGAGGTGAAAAACCGCTTGAAGCAAAAG
Seq A exon
GTACTTGAAGTTCTTATTCAAAATGTATAAGCACCGTGTATGAAATGCGTGGCCACAAAAAAGTAGGATGTGATCAATAGAAGGCTGTTTGATACAGTGTTGTTAGCACACTTCAAAATGCATTACCAGCTGTCCGGGAGTTTCACACTGTTATAAATATTCACAGACAAAAAAATGTCTTCAAATAACATTAAGACTCTTTGTGGGCTTAAACCCACAAAGGCGAGTGAGTTCAGAGTTACCACTGTCTCCCAACCCACCCCACCAGGCCTGGGATTTGCAGGAACCCAGCAACACTGGCTCCCTCATACATACTCTCCACCATCCCGGTGTCACTCTGTTCCTACAGCCACCCTGCCTACGCTCTGGTCTAACTTAAACCCAAAAGCATACCCAGAGAAAGGACCACCCTGTTTCCAAGCAGATACACACAATGAGCAAGCAGGAAGGGAATACCATAGGTCTCCCCCAACGCTGCACAGAGCAAGAGTAGCCTAGCCTATGCATAAGGTACATGCAAGCAAGCAGAGGCTCGGATTGTCTCTATGGTCCATCAAAAAATTTGCATGTAGTGGCTGTGGCTGGAATTTCTATAACTTGGGTCCCAGGGGGGTACAGCTGTGTAACCAGAGCCGGGCAGTGGTGTGCGTGTAACACCATTGTAGCATGCCTGCCAATACTGTGATTGCCACTCCATGTTCAAGATGAGCCAGAGTAGAAGCTGTCACCCCAAATCCCTAGAACAAAGCTGTGAGTAAAGAGACTAATTCACAGGTGAGGTAATTCGCCCAAGGCCACATTGTATGAGCCTAGCAAAGACAGGATTAGATGTCAGATCTGTTGACCTCTGCTGTCAGAATACTTCCACTCTGTACCGCCTACTGCTTCCCCCAAACGTGTATTTTCTTTTGCAAAAGATATCTGGGGCCATTTCCCCCAAACCCCTAATTGTACCACTATCTAGGCAGTGTGTGTTGGTTCTGTTTTAATTGAAAGCAGTTTCAACTTTATAAAGTTGGGGAAATCCTCATTAACTTGAAATGGGTCGAAGGAATTGATTCCTTTCTTTTAATTGGAAAATAATTTGCTCTTACTAAGCATTTAAATTCCCGCTTTGGCTGACAATGAATTCTTAACAACTGAGGTTCTCATCCTGTGCTACAAACCATGTAACACAATCCACAGACTGCATGGCAGTCTGCTCACCCTGGCAGACAATGGCAGGTGGGACTCTACATAGATATTATCTGAGTCACTGATGATACCTTTCATCCCCTGTCCCAGTCGCGTGGAGATGAATTACATGTGTCCAGGCGGGGGCTCCCCACCCCCCAGCGTCTAAATTGTAGGCTATGATTATTTGGTATAATGCCTGAAATAAGCAAAGGTGGGGTCCCTCCTCAGGTGCCAGACAAAAGGCCTCATGGGTCTCCTTGCTCCTGCTGACCATGAAGCCAGAGACTGCCATCAGAGTTCCTTCCCCGCTCACAGTCTCTCTACAGCAGCTAGCAGAGCTCAGCTTTTTTCCTGTGTTTACCTAAAGGCTCATTTACACAGTCTAGAGCATGTTCCCTACACACAGTCCACCTTTCCTTCCTTCACAGACTGTAAAGAGTTTTCCCCTCCCCCCATCCTCAGCCTGCACCAGTCTTTTCAAGAATAGCTTCAGGAGATAATGTTCTACAGAGTCAGTGTCTCTCAGGTGACACAAATGGTGAAGGCATTTTATAGAAATGTGGCTTGTCACCACTGGACTGTTGACAGATCTATTAGTGCACCCTTTTCAATTTTCACTTTTCCCCCCTTGGCTCTTACAGATTTCCACAGACTTGATATTTCACAGTTGTTCTTGGAAGAGCTGTTTTGTAATTGAAACCCCAGCATTGTTCAGTACATACAGGCCCCTTGTCTCTGGTACTCTCCAGCTCTTTTTCTTGAGCTAATTTAGGATTTAGCTTCTCCTGACCTATCTCACTGTAGTGGAAAATATTTCCTTGGCTTTTTTCTCCCCTTCCATCCACCCGCTTCATGCAATATGGAACCTGTCTCTATGACTCCCCATACACCTAACACAGGCATCAGAAGTTTGGTTTCTACTATAAAATTGAGGCAGTCGCCAGCAAAGACCCAATTTTCCAATGTGCTGGGTTGCCACCTGGCCTCCTCTAACTCTGCATAGCAATGGTGACCTCGCACACATAATCAAGAACCCAATCTTGCCCTCTTTGCTCTTGCCTTGGGTTTGAATTGCAAATAGAGAATGTGGGGCCGACCTATGAAGAGGTCACCACCATGTGTGGAGAGTCCATCTCTAATATAACTGAGCAAGGCCCCTTTTCCATCCCTTGTTCATCTGTGATAGATTTTTCAAAGCCTCTGAAATAGCTTTCAGGGAATCTGTGACCATTGGCAAGTGATTGTTCGTAGATCCTATAGTGCTGCTTTATTCCATGCCTGCTCTGCTTCATCCCTAGAACAAAAAAAAAAAAAAGATGGAGAACATTATTTCTCTGGATAAATGGCACAAAGGGGCCAAGTTCTGCTGTAGCCTAGCCTCCTTTGAAGTTCAGTTTGCTCAGAGTTAGGAAGGAGAAATGACAGGGATTCCAGCCGTAGCTTCCTAAGCGAGACAGTGGCACTTCCCTAGGAGTATGTCCCCACCAGGCTTGACCTGCAGAAGAATATTGCCAAATTGCGTTCTGTTTCCCTGGTTCAGGCTGTCTAGAGAATGCACTTTTGGGCTAGAGAGCTCAGCCGTTAAAAGCTAGACTTACAACCAAAAATATAAGAGAATGCACTTTTAATCCAGTAGCTGCACACTTTCTCTTTACCTGTAGGGGGCACTAAAAACTTCCTACCCTATGGTGGCCTCTTGAGTTGTAGTTCTGTCTTCCTCCTTCCTCCTGTGTGACCCTTCAGAAAGGAGTGACCCACCCCTCCCTGAAGCTCCTTGTTTTGCCTTTTAAAATGACATTTAGAAAGACAAGTTGTCCTTGCCCCCATCTCCCACCCCCGTTTGCCAACAAATTGTATGTTTATTGTATGTGTATTTGAGTGCCCTTCAGAAATCCCTGATTTTTTTCCCCTAGTTTCAAAATGCTTAACCAAATGGGCCCATTTCATAGCCATTTGGAGAGTTTGTAAATCACTGTTCTTTAAACGACAAGTTGAGCTTGATTAGTGTCTGTGATTGAAAGGAGCAAACTCACAGTTGGCTTGACTTTCCAGCCAAACGCTCGCAACCGTAATGAAGGGCGTGAGCAAGCATGTGGGGGCAGGGAGAGCAGGTAGACTCATAGAACAGACATTTTCACACCGTATCACACAGCTGTCAGCTCCCTGACTTTAGACACATTAAAATATGCTGCAGCCTCAATCACCAAGACTCCAATTTTGGCTACTGATTTAGTATCAATATTCATATTTTAATTTACATTCGCTGTTATGGGAAGTAGACTGGAATAAGACAGGTACAACACAAATCTCAAAGTGGAAATAACTTCTCTCACAGGAAATGAGAAGGCACTGGCCTTAACCATACACACCCACTCCACCTCCAGGGCCCTCTCATGGGGATGTGGCATTTAAGCTTTGGAGGTCAATCAGAAGATTCAGTCTGGTTGTGTAGGATATTAACTGTGTGGCCCTGGGGGAGTTACCAACCATCTCTGTTTTCCTCATCCATAAACTAGGAAGCATCTTAGAAGAGGTGAGGTGTTTTAACAGTAGTACTTAGTAGCAGCTCCATGAATGGGAATATATATTCTCTCCATTTCATACCTAGAACAAGACAGTCTGCCCAAACACCATGGGACCCACCTCCTATAGGTTGTTCCCACAGCCACAGGAGGAATTTTTCCAAACCATTTCTTTGGTTAAAGCTGACCTCAGCCTGCTCAGCAGAAAGTGAGGTACTCTATGCATTCTTGAAATGCTAGGCCCTACTCCCAACTACAGTTGTGAATGCCTCCCGTGGCTTTGCTTCTTGGCTGCAGGAAGCCTATCCCCAGCTCCTCTTAAGGTCATTTGAGTTGGCCTCTTAAGTTGCGTAGCTCTGTTTTCCTCCTCTGTGAACCTTCAGGAAGGAGTGGCCCACCCCTTCCCTGCAGCCCCTTGTTTTGCTTTTTAAAAATAGCATTTGGAAGGTCAAGTTTATTTTTTCTATTTGCCAACAATTCACATGTTTATTGGGAAATTCAGCAAATCAAGAAGAAAAATAATGTCCCTTTTCTTCTGCATTTTCATATAGCATGCCCTGAACTTGTCCTTCTAAAAATGTTTTTTCCATCCATCTTGTTTTAAATGGCTCATAAGTTTATTAGATTGGCATATTTAGACAAATACTACACATAGCCACACATATATACACACACACTACACATGCACACACATACACACACACCTTAACCAATTCTGTTGAACACCCGCGTTACTTCTAGGTTTCTTCATTTGAAAACATTCCTAGAAATGGAATTAGTGAACCACAGAACATTTGCATCTTGTGGCATTTTTCTATAAACTTCTAGCTCGCCTTTCTCCAAGGAGGGTATCAGGGTACCCATATCCCAGTTCCTTCACTGATGGATCAGTTAGTTCTTGGGCCACAGTTTCTTTAATCAAGAAATAGAGTTTTTCCTTTGGTTCCTACTCATGAAGTATGTCTGCTGGTAGATAGAAAAGTTCACTGTTCTCTTTGCTCCTCCCCCTCTGCTACCTGTGGCATCCTTAAAGGAAGCAGTTGTCCTTCCCCAGATGAAGGAAATAGTGAAGAAGCCAAGCACTTTGTGGGAGAGCCATGAGAAAGTACAGAAATTTTGGGGTGTCTGGAGATTCTAACTAAACAAAATGTGGCTTTTAGACACCCAGGCACATTTACCTTACAAATGTTTGGTTCAGCTTAATAGAGATTTATGGAAAAGCTGTGCTAGACTCAAGAATACCCAGATTCCAAGGAACTCACAACTTCACAATAGATGGCCAAGGTTTGGTGGCCTGTGACCAGTTTAGCAAGAAGGGGTGCCAAGGAGGGAGAGGAATTCATTTCTGATGGCCAAGCATAGCATGTACCCACCCCCTCAGGCCAGGATACCTTCACTTGGGCTTTAGTTAGGAATTGATATGATTTAGATGTCACCAGTCCTAATTTTAGGTTCCTCCACTGTATAGCTCCATGGTCTTGAATAGGTTACCCTATCTGAATCCTATTGCCTCATCAGTAAAGGAAGTATAATCCTGTTTATTTCATGATCATCCTGAACACTAAGTATGAGAATGGAAATCTAGAATCTAGAAAAGTAGCCACCAGGACTAGGTGCCCCCCCCCACACACACACACAAACATAGGGAAGCATTGTGTCCTTTCTGTTTGCACAATATTGGACTCTGTCAAAGCCTCCTCATGGCTCATCTCATTTAAACCATCCTCCATGGACCTTTGCCATAGGAATCTTCCCTGTTGTAAAAACAAAGAAACCGTTGCAGATGGTAGATGAGTCTGAAAGATCAGGTAGCTAGTTGATAGAACAGATAAGACCAAAATACTGCACTTTTTACTTAAAGCTTAAGATAAGGCACTTTTCCCTAAAACTATCGTGTTTTTTTTTAAATAATTATTTAGTAGTTTCCTAGTTAATATATTTTCCTACCATGCACACATGATAGAGGGATATTTTCCAGGACCAAAAATGAATGTATTAAGGTTTGGCCTCATTCACCCTGTGTTAATCCTCTAGACGCACCCACACACACCCGACGTGCCCCTCTTGGCCTTTAGTTGCTCTCTGACACAGAAGGAGCCCCTCCTCTACTTTGTTCCATTTGACCCAGGCACCTTAGGGCAGTCCCTTTCCAAACAATCCATTTCTAATTGGCTGTCAGCAGCCCCTTTCATCACTGAGCCTTAGCTTAGCTGAGATTGGCCAATCCAATGTGGGCCACAAGCCTAAGCCCAGTTTGTAAGGCCAAAAGGTCATCACCTTCCTATATCATTGACCAAGCAGAGACTCTTCTAGGTTGGCTTGTATGGCAGCTGATTCCTTAGGAAAGGAAGCCAGGAAGTAGGCAGTTAGGTATGTAACACTGAACATTCACACACACAGGCACACATTTGCATACACACACATTATAGATACACACATTTTATTCCAGTAGTTTATTGAGTAGCTAATGATGCTCTAGACACTTGTGTTACATTACCTATCTCTTTTCACCCCTAGTTCCCATGTCCCCACTTACAGGGAAACTGAGGCTCAGAGATCTTACCTAGGTCTCCTTCTTAGTACATAATTACTTCCTAAGTAGCCACTTTCCTTCTGTCTCATCATTCTCTCAGTTGAGAAAGAGTGGCCAATGATCAGAAGCCTCCTCTGTTGACTGAAATGTATAATTGTTTTTACAATGGGAAAAGTTAGATATTATGATATTTAATTCAGGGCGTGAATAATTTTTATTGTGAAAAAAAAAAATGACGACCTCAGTGTTATTTACCCGCACCTTTACTCTCTGGCTCGTCTCACGCGACTTGCTTGACCTCAATACAATGTATAGTGCTTACTTGTCTCCACTAGCCCACACCAGTGCACAGCTGACACACACAGCCGATACTCTGCAGGTCACGGAGACCCTTAGGCCCCTCCAGAAACACAAGGAAGAGAAAAGAGAGCCAGGAAAATGGTCTGGAGTGCCACCAGAAAGCAGACAGAGAAAAAAGGCCACACTCACAAATAATCAAAGTAATGCAAATTAAAACAACAATGAGGTCTAATTTTTCACCTATTAAATTAGCAATACATTTTTAAAATGATAAGGCTAACAAGTACCGTGAAACTGATAACATACCCATTGCGGGTAGTTGGTGTAAATTGGGAAGCAATTTGGTAGAATGAATAAAAAGCTTTAGAAAGTGTTTATATTTGACCTCATGCTTTCATTCCTAGGGATTTCCACAAAAGCAGTAATACAAAAGGAAAGAAAAATGTGACATGTATTGCTAGCATTTAGAAAGAAAGAAAAAAAAAAAACACCCAATAGTGATGGGATGAGTTATTAAATCATTAGATGTCTGCTCAATGAAAATATTATGCATCCATTAAAATTATTATTATAATGACTGTGTGGCACCATGGTGATGCTTATATTGGAGAAAAACAGGATATAAAATTATGCATGAGCTGTGATTACAAGTAATTTTTAAATGTCTGCATATAGACAAAGTGAATGTGTGAAAATGAAAATAGCCATAGAAGAATGCAGAATGAAATAGGTTTTTCACTGTAAATTATTATGTTTATAGTTTCATGTGGATGGTTTTGGCTTCTTTGGTGCATCAGTGTCAGAAGGCCAAGTTAGCGTCTATGTCTTCTGCCTCTCCCAGGGGGCCAGGCTTAGAACGCCTGGGGCAGTTATTAACAGACCTCTTGGCTTGGGATGACGCAAGAGGGCAAAGGGCCAGGACCCCAGTGCAACCCTAGACCTTCCTTCTTCCATAG
Seq C2 exon
GACATCACGGAGAACGGCTGTGTGTCCTCTGCAGAAGATCCACTGCCAAAGACCATGCCATCCCCACAGGCAGAGACCCAGGACCCCAGACTTCGAGAAGACCGGAGACCAATCACAGTCCACTTTGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035392:ENSMUST00000102787:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.543 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types