GgaINT0124170 @ galGal4
Intron Retention
Gene
ENSGALG00000001157 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr17:9052661-9058145:-
Coord C1 exon
chr17:9058089-9058145
Coord A exon
chr17:9052793-9058088
Coord C2 exon
chr17:9052661-9052792
Length
5296 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTT
5' ss Score
8.4
3' ss Seq
TCACCTTTTCTTCTACGCAGGAC
3' ss Score
10.42
Exon sequences
Seq C1 exon
GCAAAAGATCATGCAAAAATGGGAATAAAAGAAGTGAAAAACCGCTTGAAGCAAAAG
Seq A exon
GTACTTGAAGTTCTTATTCAAAATGTATAAGCACCATGTATGAAACACTTAGTCACAAAAAGCATTATGTGATCAATAGGAAGCTGTTTGATACAGTGTTGTTAGCACACTTCAAAATGCATTACCAGCTGTCCTGGATTTTTCACACTGTTACAAATATTCACAGACCAAAAAAAAAACAAAACAAAACAACAAAAAAAACCAACAGTCTTCAAACACGTTAAGACTGACTTAAACCCACAAAAGCCAGAAAGTAGAATTTTCTATTTGGAGTGGTCCATCTCCTGTCCATTTTGCTGGGGCATTATGGAAGGGGACTTTGCATGAACTGGGAGATCTTTCTTACAGAAATGGCAGTGAACTTCTTCCAAATGGCGGATGTTCTTCTTACTGCAGGAAAAATAGCACAGCATCTCTCACTGGGCAAAGGATTTATACACTCCATGACCATATACTGCAAAGTTTAGGCAGAAGGAATTGAATTAAGTGTTTATGTTCAATTCAAATCTGAATTTTTGCTGCAAAAAATACTCAAACTGTTTGTTGTTCTCTGAATCTGTTTTTGTTTGTAAACAGTGCAATTCCCAGAACACTGAATTGTGTTTGAGAAAAGTGTCATCCAATTTTCATTGCTTGTTTTAAGCCAGAAGCATGGTCGTTCTGATACATGCCTTATGGATGAATAGTTGATTCTGCCTTGGTTTACTTCAGATACTCTGTTTATCCTTTGAAGCGGAGCAACTAGAGAGTTGTGGAAAAGCAAGATAGCTAATTTGTTAATATAATATATTTGTTAATGTAAGTTCTTATTTAGAATTTGTTGCATAACAGAGTGGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTTTAGTCTGTGTTAGCAGTACATTTTTCACTAAATTTCTAAACCATCATCTTAAGATAGTACTGCAAATGTTTCCATATAGCACAAGTAGAAATTTGCCTTAACGCGTACACAGAATATTAATACAAAGGGGTTCTCCTGTTGCAAGGTTATAAACTCATGAAATTAACTTCATGTACAGTGCACAGTCTGTAAATACTCTAGCAGACTGTGAGAGGTTTGGGGAAAGATAAAACTGCTTCAGATGCTTTTAATTCTATTTCATTTCATCATATTTACTACTTTGTATGTGACCACTTATGGTATAATATGAAAATACTAAATAGAAACATGAAACAGTTTTCTCGTGCATGGAAATTTATATATAATTCCATGTGTTTCACTTCTGGACATAACCTTCATGAATAATAAAGTGCTTGCCCTTCTCATGTGCATTTCTGAAGCAGTTGGTGCTGTGTAAAATAACCAGATTGTTTTCCTGTATCTTAAATGCTAATATAATTGTATGCTATTCTGTGACATTTGTATAAAAGGCTGAGAAATGTTCCTTCATTGCTTTGTTTTATTATTTTTGTCTTCCTAGTCCTTCAAGCAGCAGGCATTCCCTTTTAAAAAACACATACAACATTTACAAATAAATAGCCCAATTTTGTTTCACTTTCCTTACTATGTGGCATTTCTATAAAGCAGTGAAACGTGATTATTCAATGTACGTTTTCACAAGGGCTTAAAAGACTTCTATAGGTAGCTGACACATACTGTTCTACCTCTTCCTCCTTCAGTAGATCTGTTCTTTACCATCCTCTTCTCCATTTTAAATGTAATATGAGAAAATAATTCTAAAAAGATACCGCTCTGTTTAAGGTGGTAATAGCAAAAACTGGTTTGGCCACCTTCATGTATTTTTTTTAATCTAGCTGTCTATGCTACTCTATTTCTAAATCCATTAGGTGGAAATGGGTGAGGGTGCACATTATATTTTTCGTGTATTTGCTTACAGTATGTACAGATGTTTTGTGTTTGTAATTCTGGTGTTGTTAAATGCTAAATTTTTGCCAAATTTGGGGTGACAGTCTTTCATATTCTGTAGATAACCCGAGGTTATTTTTAAACTGAACTTACTGTTCACTGCATTTTAAAATATTATTTCCCATTATTAATGCAGAAAGTATGAAGGCCACTGGTAAGGAAAAGTCAAATATAAACATCCTTTTTCCAGTTTTCACTGCCAAATACGAGCAGCTTCTGTACAAGGCAGAATTTAAAAATGCAATAAAGCTAGAGGTCTGCTTCCTGCAACTCTGCATAGCAATGATGACCTCTTAAATATAATCAAGAGCCCATTTTGCCCTTGGTCTGCTCCAGTCTTGGGTTTGAATTGCAAATGGGAGATGCAGGATTGACCTGTTGAGAGGTCACTGTGGTGTGTGTAAGGTCCTTCTTTAATATGATAGTAGAGATTGAATGGGGTTCTATTTCCATCCCTTGTTCATTTGTGGTACAGTATTTCAAAGCAACAGAAATAGTTTTCAGAGGATTCTTATGAGTGATAGCAAATAATTGTTAATAGATACAGCATGGTAGCTTTATTTTATATCTGCTACAGAACTTTTTTCTTCTTTTTCTTTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTACCCCTTTTGTAAACGCTGCTTTTTCTGTTTTACAAATGGACCATGGTGGTCAAGTCACTCTGTTATTGGCTTGTTTGAAGCTTAACTACATAGAAATAGGAAGAAGGAGGAATGTGAATGGTACCATCCTCAACTTTCAGAAAGGAGAATGTAACTCACTGAAAGCTTATGGATAAGACAATTTATATAAATGGTAGGGCACTTGGCATTAATGTATTCAACACTATTTTACTTAGTAGAGCCCCGTGTGGCTCTAGTTAATGTCTGTTATCAATGGGCTGTTGTCAGTGCTTTATTATCAGTGCAGATGGAAACATCTCATTTAAAGGTTTAGAAAATAACCCAAGGATGTTCCAGCACGTGTTTCTTGTGCTTCTAATAGACAGCATTTGTATTCCATTATATAAGATCTCTAGAAAAATTAATAATGCATTTTTAAGCAGATGAAAACCTTATTCAGCTTAAACTACGTATGTCTAGTTATATCTTGCTTCTGCTCTGAAGTTTCACCTTCAAAATAAATAGGTAGCATAGACCATCTCCGGACAGATAGTTGTTAGGGGAAGCGCCATTTATATACTGAGTTAACTACAGAGTGTGACAGTCTTTATCCACTAATTCATAAAATATGTTATTTTCCTGAAGTAAAAGGTCTTCTTTTGTTTTCACAATATTCTCATATTATACTTTCTTTTTATTAAAAAGACACTGAGACATTGTTAGGTTTTTGTATTTCTGGAGTTTTTAAAAGTAAAGAATAACTTTTAAGGCTTTTTGTTCTGTTGAATGACAGTTGACTTAAGCTACTTCTGGAATGTCTTACTGGCTCATACAAAATCCCGTGCTGGGGATGTATCAGAACTGAGCAGTCAGACTTAGGACATCATCCACACAGAATGGTGTATGGCAGTGCAAAGAACTGCTTGCAGGCTCCAAGCAAATAAGAAATGTTTGACCAGCGCAGATGAAGTCCCAACACTGATCTCAAAAGCGATATGGAAACACGAGTCAGCATCCTGGCTGGAAATCCGCTCCCTCAAGTGGCATGCAGATGTTACTCTGCTTTTCTTTTAGCAGTATCAGGAAAGGTGATGGCATTTTCAAGGCCTTTCAGCACTGTGGTCCACTGCAGTTCTTAAGTCATTTGTGCACACAAGCTGTGCGTTCCAGGCGGCTTTGGATGTGTTGGATGTGCGAGTAGTGTGCGCACAAAGGGCCCAGAGCTTGGCTTGGTGCGCCTTTAATATGGCTAGGCTGTATTAAAAGTTTTGTTACAATATATATTGTATGTAATATATTGTGTTACATTTCAGAACAGTTGTGTTGCTGCAACAGGTGATGTGATTCCAAAACTGACCAGGCCCCTAGGTAGTTTGGTGCTGTTTTGGAGCAGAAGTATGAGTTTGACAGAAACTTACATTTGTCATCGTCGAGTTGTCTTCTGGCTTTGTTACTAATTCAATGTACATGGATGTATTCTGTCAAGAAAAGGTAGCGTCGTGCTGCTGGTGGGGGAGAGGGGAGGAAAAAGTTTTTCTCTCTAGTTTGACCTTAAGAAGTTGTTAATTTCCCCATGATCCTTATGCCCATCGTGGTGAACCACTGCTCTACCGGCTGGATCTAAAAAGGTCTCTCAGCTTCTCTGTGGAGCAGACAAAGCCCCTTAGAAAGTCCATCCAGCTTTTTGTTTCATTTGACCTAAACACATTAGGTCAGTCTGTGTCCAAAGGAACCATTTCTAATTGGCCATCAGCTTACATGTCTCATTATTGTACCTTAGCAAGACGGAAACTTGAGGGGGCATGTCAAAGGTCAGTGAATCAAAGCAATGTGTGTGTCAGCAGCCAACCTTAGGTCAGTCTTGCAGAGCTACAGTGTGTGCAGGTTTCTCTCTATATTTACCAAGCATTATTTCCTTGACATTGTTGCAAGGAGATTTAAGGTTTGGGGCCCACTGCGTTACAGACTGTTTCTCAACTGATTTTCAAACTCTTTTCTCCTCTTCTGATTCCTTGTGTCTGCATGTCTTTGTCTTTTTCAAAACCTGTGTTAGACATACCATCCATACACTTTCCAAGTCTTGTAACCTAGACTGATGGGTCATTTTACTTCTGAAGATGAGGAGTAACCTCAAAAGCAAAACAAAGCAAAAAAGCATCCTGCTGCACAGCAGTTTGTTTTATATAATCTCCTGCAGGCATGCTCAGTTATGCATAGACTCAAAGATGAGATACAAAGTTAACTAAGCTGAGAGTTTGATCTCTCCTTGCTACTTCAACAAGTAATTGTTCTATTACAGATCATTCTGTAAAGTAGGTGAGTAGAATTACTGTTTTCATTTGCAAAATAAATAAATAAAATTAAATTAAAAAAAAAAACAAACAAACCACAGCAACCAATCAACAAATGGAATAGCCCTGTTCCTAGGTTTCTCTTGACTTTGTTCATAGAATGAAAATTTGGAGCTATGTTTTGTTCTCAGTATATATTTTCTAGCTTTTTCATGTTTAAGTCAGACATTTTATTGAATGTATCTACATGAAGCATTGGTATTTGAAGGACAGTGTGGTTGTTTACAGTACGTTTGATTGACAAAATGCAGTGAAATGTTTTATTCTATTGAGGTTTTCTTTTCTATACTTTTTTTTCTTCTTGCACATATAAGAGTGGGTAGTCAAATTATCCTATAGTGTTCCTCTTTGTGCTTTTTACTATTAATCAAGAAAGTTTTTGGCCATGCTATTCACCTTTTCTTCTACGCAG
Seq C2 exon
GACATAGCTGAGAATGGGTGTTCTGCAGCACCAGAGCAGTCTCTACCAAGACCAGCACCTTCTCCATTGGTTGAAAAGAAGGACACTAAATTAAGAGAGGACAGAAGACCAATCACAGTACATTTTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001157:ENSGALT00000001740:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.242 A=NA C2=0.905
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]