RnoINT0046413 @ rn6
Intron Retention
Gene
ENSRNOG00000010526 | Dennd1a
Description
DENN domain containing 1A [Source:RGD Symbol;Acc:1307927]
Coordinates
chr3:22106402-22114027:-
Coord C1 exon
chr3:22113971-22114027
Coord A exon
chr3:22106534-22113970
Coord C2 exon
chr3:22106402-22106533
Length
7437 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTT
5' ss Score
8.4
3' ss Seq
GACCTTCCTTCTTCCCACAGGAC
3' ss Score
13.23
Exon sequences
Seq C1 exon
GCAAAAGATCATGCAAAAATGGGAATAAAAGAGGTGAAAAACCGCTTGAAGCAAAAG
Seq A exon
GTACTTGAAGTTCTTATTCAAAATGTATAAGCACCGTGTATGAAATGCGTGGCCACAAAAAAGTAGGATGTGATCAATAGAAGGCTGTTTGATACAGTGTTGTTAGCACACTTCAAAATGCATTACCAGCTGTCCGGGAGTTTCACACTGTTATAAATATTCACAGACAAAAAAATTGTCTTCAAATAACATTAAGACTCTTTGTGGGCTTAAACCCACAAAGGCGAGTGAGTTCAGAGTTACCACTGTCTCCCAGCCTGCCCCACCAGGCCTGGGGGTTGCAGGTGTCCAGCAGCCCTGGCTCTCTCAAACATAACCGCCACCACCCTGGTATCACTCCATCCTGCTGCCACCCTCTGCCCCCGGTCTGGTCTTAACTTAAGCCCAAAAGCATACCCAGAGAAAGGCCCACCCTTTTTCTTGCAGATACACACAAAGAGTGAGCAGGAAGGGAATACCATGGGTCTCCCCCAACACTGCACAGAGCAAGAGTAGCCTAGCCTATGCCTAGGGTACATGCACACAGAGACTGATTGTCTCTATGGTCCATCAGAAAAATTGTGTGTAGTTGCTGTGGCTAAAATTTCCCCAACCTGAGTCCCTGGGGAGTACAGCAATGTAACCAGAGTGGGGCAGGGGTGTGTATGTAATAGTATTGCAGCATGTCCTCCAATCTGTGAGACTGCCACTCCTTGTTCAAAATGAGCCAGAGTAGAAGCTGTCACCCCAAATCCATAGAGCAAAGCTGTGAGTGAAGAGACTGGTTCACAGGTGAGGTAATTCGCTCAAGGCCACAGTGCGTGAGCCTAGCAAAGACAGGATTAGATTTCAGATCTGTTGACCTCCACTGTCAGAATACTTCCACTCTGTACTGCCCACTGCTTCCCCCAAACAGTGTTTTCTTTTGCAAAAGATATCTGGGGTCATTTTCCCCACACCCCTAAATGTACCACTATCTAGGCAATTTGTGTCGGTTCTGTTTTTAATTGAAAGCAGTTTCAACTTTATGAAGTTGAAAAAATCCTCATTAACTTGAAATGGGTCGAAGGAATTGATTCCTTTCTTTTAATTGGAAAATGATTTGCTCTTACTAAGCATTTAAATTCCTAGCTTTGGCTGACAATGAATTCTTAACAGCTGAGGTTCTCATCCTGTGATACAAACCTTGTAACACAATCCACACAGACTGCATGGCAGTCTGTTCACCCTGGCAGACAATGGCAGGTGGGACTCTTTACATAGATATTATCTGAGTCACTAATCATACCTTTTCATCCCGTCCCAGTCACATGGAGATGAAGTACATGTGTCCAGGAGGGGCTCCCCCACCAGTGTCTAGAGTGTAGAGTACGGTTGTTTTGTATATCGCCTGAAATAAGCAGTGGTGGGGTCCCTCCTCAGGCGCCAGACAAAAGGGTCTCCTTGCTCATGCTGACCATGAAGACAGAGACTGCCCTTCAAAGAGTTCCTCCCCACCACACAGTCTCTCTGCAGCAGTTAGCAAAGCTCAGCTTTTTTTCCCTGTGTTTACCCAAAGGCTCATTTACACAGTCTAGATCGTGTTCCCTCCACACACTCCACCTTTCCTTCCTTCATAGACTTTAAAGCCATTTCCGCCCTCCCCTGCTCCCTCACCAGCCCACACCAGGCTTTTCAAGAATAGCTTCAGGAGATATTGTTCTACAGAGAGTCAGTGCACCTCAGGTGACACAAACGGTGGAGGCATTTTATAGAAATGTGGCTTGTCACCACTGGACTGTTGACAGATCTATTAGTGCACCCTTTTCAATTTTCACTTTTCCCCCCTTGGCTCTTACAGGTTTCCACAGACTTGATATTTCGCAGTTGTTCTTGGAAGAGCTGTTTTGTAATTGAAACCCCAGCATTGTTCAGTACACACAGGCCCCTGGTCTCTGGTGCTCTCCAGCTCTCTTTCTTGAGCTAATTTAGGATTTAGCTTCTACCGACCTATCTCACTGTAGTGGAAAATATTTCCTGGGCTTTTTTTCTCCCCCTTCCATCCTCCCCCTTCATGCAACGTGGAACCTGTCTCTATGGCTCCCCGATACACCTAACACAAACATCGCAAGTTTGGTTTCTGCTATGAAATTGAGGCAGTTGCCAGCAAAGACCCAATTTTCCAATGCACTGGGTTGCCACCTGGCCTCCTCTAACTCTGCATAGCAATGGTGACCTTGCACACATAATCAAGAACCTAGTCTTGCCCTCTTTGCTCTTGCCTTGGGTTTGAATTGCAAATAGAGAATGTGGGGCCGACCTATGAAGAGGTCACCACTAAGGTGTTTGGAGGGTCCATCTCTAATGTGACTGAACAGGGCCCCTTTTCTATCCCTTGTTCATCTGTGCAATAGATGTTTCAAAGCCTCTGAAACAGCTTTCAGGGTATCTGTGACCATTGGCAAGTGATTGTTCATAGATCCTATAGTGTGGCTTTGTTCCATGCCTGCTCTGCTTCATCCCTGGAACAAAAAAGAAAGATGGAGAACATATTTCTCTGGATAAATGGAACAAAGGGGCCAAGTTCTGTTGTAGCCTAGCTTCCTTTGAAATTCAACTTGCTCAGAGTTAGGAAGAAGACAAAATGACAGGGATTCCAGCCATGGCTTCCGAAGAGACAGTGGCACTTCTCTGGGAGTATGTCCTCACCAGGCTTGACCTGCAGAAGAGTTTCACCAAATTGCACTCTGCTTCCCTGGTTCAGGCTGTCTGGAGAATGCACTTTAAATCCAGTAGCTGCACATTCTTCCTCTTCACCTGTAGGGGGCACTAAAAATTTGCTGCCCTATGATGGCCTCTTGAGTTGTAGTTCTATTTTCTTCCTCCTGTGTGACCCTTCAGTAAGGATTGGCCCATCCCTCCCTAAAACCCCTTGTTTTTGGCTTTTAAAAAATGATATTTAGGGGTTGGGGATTTAGCTCCAGTGGGGTAGAGCGCTTTGCCTAGGAAGCGCAAAGGCCCTGGGTTCGGTCGCCCAGGCTCCAAGAAAAAAAAAGACAAAAAAAATGATATTTAGGGGGCAATTGTCCAAGGTGCCCTCCCCGACCCCATTGCTCAACAATTGCTAAGATTTATTGGTGTGCGTGTATTTTATTGTTCCTTGAGGAATCCGTGAATTTTGATTTCTTTAGCTATCAAAATGCCTACGAAATGGGCCCATTTCATATCCATTTGGGAGAGTTTCTAAATCACCGTTCTTTAAACAAGTTGAGCTTGATTAGTGTGTGTGATTAGAAAGGAGCAAATTCACAGTTGGCTTGACTTTCTAGCCAAACACTTGCAATCGTAATGAAGGGCGTGAGGCGCAAGCGTGTGCGGGGGCAGGGAAGGGCAGGTAGACTCACAGCAAACGCAGACATTTTCACACTGTATTCACACAGCTGTCAGCTCCCTGCTCTTTAGACACATTAAAATATGCTTCAGCCTCAATTCACCAAGACTCCAATTTTGGCTACAAGTTTGGTATCAATATTCATACTTTAATTTACATTTGCTGTTATGGGGAAGTAGGCTGGAGAAAGACAGGTACAGCACACAATCCTGTCCTTGCTGACCTCAGCCTACTCAGCAAAAAGTGGAATTTCTTGGAATGCTAGCCCTACTCCCAACTCCAGTTGTGAGTGCGCCTCTTGTGGCCTTGCTTCTTACAGCAGGAAGCCTGTCCCAGCTCCTAAGATCATTTGAGTGACTTCTTGAGTTGTAGGGTCACTTCTTCCTCCTGTGTGACCCTTCAGGGAAGGATTGGCCCACCCCTCCCTGCAGGCCCTTGTTTTGCCTTTTTAAAACAGCATTTAGAAGGTCAAGGGCTTGGGGTCTTTTTTGTTTGTTTGTTTTTTCCTGTTTGCCAACAAATCACATGTATATTAGGAAATTCAGCAAAAGAAAAATATCTGTTTTCATCTGCATTTTCATATGGTATGCCCTGAACATGTCTCAGCCTTCTAAAAATGTTTCTTCCATGTGTCCTTGTTTTAAAAAGCTCATAAATTTTATTAGATTGGCATATGTAGCACATTACTACACATAGGCGTGCATGCACATACACACAACACCACACACAACACACACACACACACACACCTTAACCAATTCTGTTGGACACCTGAATTACTTCTAGGTTTTCTTCATTTGAAAACATTTCTAGAAATGTGAGTAGTGGATGCCATAGGACATTTGCATCTTGCAGCATTTTATATAAACTTCTTCTAGTTTGCCTTCCTCCAAGGAAGGTGTCAGAGTACCCATATCCCTCTCCCTTAGCTGATAAATCAGTCAGTTCTTGGGCCACCGTTTCTTTAATCAAGGAATGCAGAGTTGCTCCCTTAGTTCCTACTCATGCAATATGTCTGCAGGTAGACAGAAAAAAAGATCACTGTTCTCATTGTTCTCTTGACTGGAACTCCTCCCCCTCCGCTGCTTGTGGTATCCTCAAGGAAGCAGTCGTCCTTCCCCAGATGAAGGAAATAGTGAAGAAGCCAAACACTCAATGGGGGAGCCATAAAAAAGTACAGAAATTTTGGGGTGTCTGAATATTCTAACTAAACAAGATGTGGCTTTTAGACACCCAGTCACATTTGCCTTCCAAATGTCTGGTTCAGCTTAATGGAGATTTATGAGAAAGCTGTGCTAGACTTGAGAAAATGTGGATCCCAAGGAACATATAGCCTGGAGAGCTTTACAATAGATGGCCAAGGTATGGCAGCCTGTGACAGTTTAGCAAGAAGGGCTGCGAAGGAAGGAGAGGAAGCCATTACTAATGGCCCAGCATAGCGTGTACCCACCCTCTCAGGCCAAGATACCTTCACTTGGGCTTTAGTTAGGAGTTGATATGATTTAGATGTCACTGCTCCTTATCTTAGGTTCTTCTACTTTGTAGCTCTGTGGTCTCAAATAGGTTACCCTATCTGAATCCTGTTGTCTCATCTATAAGGAAGTATAATCCTATTCATCTCATGATCATCCTGAGCACTGAGTATGAGAATGGAAATCTAGAATCTGGAAAAATAGCCACCAGGAGTAGGAGCCCCCGACACACCCCTCTGTTTGCACTATACTGGGCTCTATCAAGGCCTCCTCACAGCTCATCTCATTTAAACCATTCTCAGTGGGCCTTGGCCAAACAACTGGGAATCTCCCTGTTGTAAAAACAAAGAAACCGTTGCAGAGGGTGGATGAGTCTAGAAGACCAGGCAGCTAGTTGGTAGAACAGATAAGGCTAAAAGACTGCACTTTTTACTTAAAGCTTAAGCTAAGGCACTTTTCCCCAAAACGATCATGTTTTCTTTTTAAAATAATTATTTAGTAGTTTCCTAGTTAATATATTTTCCTGCCGCGCACACATGGTAGAAGGATATTTTCCTGGACCAAAATTGAATTTATTAAGGTTTGGCCTCATTCACCCTGTGTTAATCCTCTAGATGCACCCACACACACCCGAAGTGCCCCTTTTGCCCTTTAGTTGCTCTCTGACACGGAAGGAGCCCCTCCTCTACTTTGTTCCATTTGACCCAGGCACCTTAGGGCAGCCCCTTTCCAAACAATCCATTTCTAATTGGCTGTCAGCAGCCCCTTTCATCACTTGAGCCTTAGCTTAGCTTANNNNNNNTGACTGGCCAATCCAAAGTGGGCCACATGCCCAAGCCCTGTTTGTAAGGCTAAAAGGTCATCACCTTCCTGTATCATTGACCGAGCAGAGACTTCTAGGTTGGCTTGTACAGCAGCTGATTCCTTAGGAAAGGAAGCCAGGAAGTAGGCAGCTGGGTATGTAACATTGTACACTCACTCACACACATGCACACACATACAGATGTACACATATGCGTGGATAAAGCTCTCTTTTCATTCCAGTAGTTTATTGGGTAGCTAACGATACTCTAGACACTTATGTTACATTATCTATCTCCTTTTCATCCCCAGCTCCATGTCCCCACTTACTTATAGGGAAACTGAGGCTCAGCGGTCTTACCTATGTCTCCTCCTTAGTACATAATTACTTCCTAAGTAACCACTTTCTTTTTCTGTCTCATGATTCTCTCAGTTGAGAAAGGGTAGCCAATGATCAGAAGCGTCTTCCTTGACCGAAATGTATAATTGTTTTTATAATGGGAAAAGTTGGATGTTATATTATTTATATTGTTTAATTCAGAGCATGGGTTATTTTTGTGATTAAAAAAATGATTACTTGGGGGTTGGAGATTTAGCTCAGTGGTAGAGCGCTTGCGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAGAAAAAAGAAAAAAAAATGATTACTTAAATGTTATTTATTTGTACCTTTATTCTCTGACTAGTCCTAAGCACTTGCTTGACCTCAATAAAACATATAATGCTTATTGCAAAAGGGGAACATGTCCATGTTTTCACTAGTCTACACCAATGCTCAGCTGACAAGCACAGCCAAAGAAGCCATGGACTACCCCTTACACATGGGAGTTTTCTTAGTTTCATTCACCAGACACACACATGAAATGTAAATGTTTAGGTTTTAACAGATTTTCTTCATCCTGTAGATACTCTGCAGGTCAGGGAAACCCTTAGGCCCTTTCAGAAACACAAGGAAGAGAAGAAAGGGCCAGGAAAGTGATCTGTAGTGCCACCGTAAGCAGACAGAAAAAAAGCCACACTCACAAATAATCAAAGTAATGCAAATTAAAACAACAATGAGGTCTAATTTTCCACCTATTAAATTAGCAATACATTTTTAAAATGATAAGGCTAACAAGTACCGTGAAACTGATAACACACCCATTGCAGATAGTTGGTGTAAATTGGGAAGCAATTTGGTAGAATGAATAAAAAGCCTTAGAAAGTGTTTGTTTGACCTCATGCTTTCATTCTTAGGAATTTCTACAAAGGCAATACTACAAAAGGGAAGAAAAATGTGACATGTATTGTTAGCATTTAGAAAGAAAAAAACACACCCACCAGTGATGGGATGAGTTATTAAATCATTAGATGTCTGCAAAATGAAAATATTATGCATCCATTAAAATTATTATTATAATGACTGTGTGGCACCATGGTGATGCTTATATTGGAGAAAAACAGGATATAAAATTATGCATGAGCTGTGATTACAAGTAATTTTTAAATGTCTGCATATAGACAAAGTGAATGTGTGAAAATGAAAATAGCCATAGAAGAATACAGAATGAAATAGGTTTTTCACTGAAAATTATGTTTATAATTTCACGTGGATAGTTTTGGCTTCTTTGGTACATCAGTGTCAGAAGGCCAAATTAGCTTCTGTTCCTCCGCCTCTCCCAGGGGGGCGGACTTAGAACAGCCTGGGGGTAGTTCTTAGCAGACCTCTTGGCTTATGGGAATGAAGCAAGAGGGCAAAGGACCAGGACCCCAGTGCAAGCCTAGACCTTCCTTCTTCCCACAG
Seq C2 exon
GACATCACCGAGAATGGCTGTGCATCCTCTGCAGAAGATCCACTGCCAAAGACCATACCATCCCCACTGGCAGAGGCCAAGGACCCCAAACTTCGAGAAGACCGGAGACCAATCACAGTCCACTTTGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010526:ENSRNOT00000025443:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.408 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]