MmuINT0048203 @ mm9
Intron Retention
Gene
ENSMUSG00000035392 | Dennd1a
Description
DENN/MADD domain containing 1A [Source:MGI Symbol;Acc:MGI:2442794]
Coordinates
chr2:37700297-37707972:-
Coord C1 exon
chr2:37707916-37707972
Coord A exon
chr2:37700429-37707915
Coord C2 exon
chr2:37700297-37700428
Length
7487 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTT
5' ss Score
8.4
3' ss Seq
AGACCTTCCTTCTTCCATAGGAC
3' ss Score
10.63
Exon sequences
Seq C1 exon
GCAAAAGATCATGCAAAAATGGGAATAAAGGAGGTGAAAAACCGCTTGAAGCAAAAG
Seq A exon
GTACTTGAAGTTCTTATTCAAAATGTATAAGCACCGTGTATGAAATGCGTGGCCACAAAAAAGTAGGATGTGATCAATAGAAGGCTGTTTGATACAGTGTTGTTAGCACACTTCAAAATGCATTACCAGCTGTCCGGGAGTTTCACACTGTTATAAATATTCACAGACAAAAAAATGTCTTCAAATAACATTAAGACTCTTTGTGGGCTTAAACCCACAAAGGCGAGTGAGTTCAGAGTTACCACTGTCTCCCAACCCACCCCACCAGGCCTGGGATTTGCAGGAACCCAGCAACACTGGCTCCCTCATACATACTCTCCACCATCCCGGTGTCACTCTGTTCCTACAGCCACCCTGCCTACGCTCTGGTCTAACTTAAACCCAAAAGCATACCCAGAGAAAGGACCACCCTGTTTCCAAGCAGATACACACAATGAGCAAGCAGGAAGGGAATACCATAGGTCTCCCCCAACGCTGCACAGAGCAAGAGTAGCCTAGCCTATGCATAAGGTACATGCAAGCAAGCAGAGGCTCGGATTGTCTCTATGGTCCATCAAAAAATTTGCATGTAGTGGCTGTGGCTGGAATTTCTATAACTTGGGTCCCAGGGGGGTACAGCTGTGTAACCAGAGCCGGGCAGTGGTGTGCGTGTAACACCATTGTAGCATGCCTGCCAATACTGTGATTGCCACTCCATGTTCAAGATGAGCCAGAGTAGAAGCTGTCACCCCAAATCCCTAGAACAAAGCTGTGAGTAAAGAGACTAATTCACAGGTGAGGTAATTCGCCCAAGGCCACATTGTATGAGCCTAGCAAAGACAGGATTAGATGTCAGATCTGTTGACCTCTGCTGTCAGAATACTTCCACTCTGTACCGCCTACTGCTTCCCCCAAACGTGTATTTTCTTTTGCAAAAGATATCTGGGGCCATTTCCCCCAAACCCCTAATTGTACCACTATCTAGGCAGTGTGTGTTGGTTCTGTTTTAATTGAAAGCAGTTTCAACTTTATAAAGTTGGGGAAATCCTCATTAACTTGAAATGGGTCGAAGGAATTGATTCCTTTCTTTTAATTGGAAAATAATTTGCTCTTACTAAGCATTTAAATTCCCGCTTTGGCTGACAATGAATTCTTAACAACTGAGGTTCTCATCCTGTGCTACAAACCATGTAACACAATCCACAGACTGCATGGCAGTCTGCTCACCCTGGCAGACAATGGCAGGTGGGACTCTACATAGATATTATCTGAGTCACTGATGATACCTTTCATCCCCTGTCCCAGTCGCGTGGAGATGAATTACATGTGTCCAGGCGGGGGCTCCCCACCCCCCAGCGTCTAAATTGTAGGCTATGATTATTTGGTATAATGCCTGAAATAAGCAAAGGTGGGGTCCCTCCTCAGGTGCCAGACAAAAGGCCTCATGGGTCTCCTTGCTCCTGCTGACCATGAAGCCAGAGACTGCCATCAGAGTTCCTTCCCCGCTCACAGTCTCTCTACAGCAGCTAGCAGAGCTCAGCTTTTTTCCTGTGTTTACCTAAAGGCTCATTTACACAGTCTAGAGCATGTTCCCTACACACAGTCCACCTTTCCTTCCTTCACAGACTGTAAAGAGTTTTCCCCTCCCCCCATCCTCAGCCTGCACCAGTCTTTTCAAGAATAGCTTCAGGAGATAATGTTCTACAGAGTCAGTGTCTCTCAGGTGACACAAATGGTGAAGGCATTTTATAGAAATGTGGCTTGTCACCACTGGACTGTTGACAGATCTATTAGTGCACCCTTTTCAATTTTCACTTTTCCCCCCTTGGCTCTTACAGATTTCCACAGACTTGATATTTCACAGTTGTTCTTGGAAGAGCTGTTTTGTAATTGAAACCCCAGCATTGTTCAGTACATACAGGCCCCTTGTCTCTGGTACTCTCCAGCTCTTTTTCTTGAGCTAATTTAGGATTTAGCTTCTCCTGACCTATCTCACTGTAGTGGAAAATATTTCCTTGGCTTTTTTCTCCCCTTCCATCCACCCGCTTCATGCAATATGGAACCTGTCTCTATGACTCCCCATACACCTAACACAGGCATCAGAAGTTTGGTTTCTACTATAAAATTGAGGCAGTCGCCAGCAAAGACCCAATTTTCCAATGTGCTGGGTTGCCACCTGGCCTCCTCTAACTCTGCATAGCAATGGTGACCTCGCACACATAATCAAGAACCCAATCTTGCCCTCTTTGCTCTTGCCTTGGGTTTGAATTGCAAATAGAGAATGTGGGGCCGACCTATGAAGAGGTCACCACCATGTGTGGAGAGTCCATCTCTAATATAACTGAGCAAGGCCCCTTTTCCATCCCTTGTTCATCTGTGATAGATTTTTCAAAGCCTCTGAAATAGCTTTCAGGGAATCTGTGACCATTGGCAAGTGATTGTTCGTAGATCCTATAGTGCTGCTTTATTCCATGCCTGCTCTGCTTCATCCCTAGAACAAAAAAAAAAAAAAGATGGAGAACATTATTTCTCTGGATAAATGGCACAAAGGGGCCAAGTTCTGCTGTAGCCTAGCCTCCTTTGAAGTTCAGTTTGCTCAGAGTTAGGAAGGAGAAATGACAGGGATTCCAGCCGTAGCTTCCTAAGCGAGACAGTGGCACTTCCCTAGGAGTATGTCCCCACCAGGCTTGACCTGCAGAAGAATATTGCCAAATTGCGTTCTGTTTCCCTGGTTCAGGCTGTCTAGAGAATGCACTTTTGGGCTAGAGAGCTCAGCCGTTAAAAGCTAGACTTACAACCAAAAATATAAGAGAATGCACTTTTAATCCAGTAGCTGCACACTTTCTCTTTACCTGTAGGGGGCACTAAAAACTTCCTACCCTATGGTGGCCTCTTGAGTTGTAGTTCTGTCTTCCTCCTTCCTCCTGTGTGACCCTTCAGAAAGGAGTGACCCACCCCTCCCTGAAGCTCCTTGTTTTGCCTTTTAAAATGACATTTAGAAAGACAAGTTGTCCTTGCCCCCATCTCCCACCCCCGTTTGCCAACAAATTGTATGTTTATTGTATGTGTATTTGAGTGCCCTTCAGAAATCCCTGATTTTTTTCCCCTAGTTTCAAAATGCTTAACCAAATGGGCCCATTTCATAGCCATTTGGAGAGTTTGTAAATCACTGTTCTTTAAACGACAAGTTGAGCTTGATTAGTGTCTGTGATTGAAAGGAGCAAACTCACAGTTGGCTTGACTTTCCAGCCAAACGCTCGCAACCGTAATGAAGGGCGTGAGCAAGCATGTGGGGGCAGGGAGAGCAGGTAGACTCATAGAACAGACATTTTCACACCGTATCACACAGCTGTCAGCTCCCTGACTTTAGACACATTAAAATATGCTGCAGCCTCAATCACCAAGACTCCAATTTTGGCTACTGATTTAGTATCAATATTCATATTTTAATTTACATTCGCTGTTATGGGAAGTAGACTGGAATAAGACAGGTACAACACAAATCTCAAAGTGGAAATAACTTCTCTCACAGGAAATGAGAAGGCACTGGCCTTAACCATACACACCCACTCCACCTCCAGGGCCCTCTCATGGGGATGTGGCATTTAAGCTTTGGAGGTCAATCAGAAGATTCAGTCTGGTTGTGTAGGATATTAACTGTGTGGCCCTGGGGGAGTTACCAACCATCTCTGTTTTCCTCATCCATAAACTAGGAAGCATCTTAGAAGAGGTGAGGTGTTTTAACAGTAGTACTTAGTAGCAGCTCCATGAATGGGAATATATATTCTCTCCATTTCATACCTAGAACAAGACAGTCTGCCCAAACACCATGGGACCCACCTCCTATAGGTTGTTCCCACAGCCACAGGAGGAATTTTTCCAAACCATTTCTTTGGTTAAAGCTGACCTCAGCCTGCTCAGCAGAAAGTGAGGTACTCTATGCATTCTTGAAATGCTAGGCCCTACTCCCAACTACAGTTGTGAATGCCTCCCGTGGCTTTGCTTCTTGGCTGCAGGAAGCCTATCCCCAGCTCCTCTTAAGGTCATTTGAGTTGGCCTCTTAAGTTGCGTAGCTCTGTTTTCCTCCTCTGTGAACCTTCAGGAAGGAGTGGCCCACCCCTTCCCTGCAGCCCCTTGTTTTGCTTTTTAAAAATAGCATTTGGAAGGTCAAGTTTATTTTTTCTATTTGCCAACAATTCACATGTTTATTGGGAAATTCAGCAAATCAAGAAGAAAAATAATGTCCCTTTTCTTCTGCATTTTCATATAGCATGCCCTGAACTTGTCCTTCTAAAAATGTTTTTTCCATCCATCTTGTTTTAAATGGCTCATAAGTTTATTAGATTGGCATATTTAGACAAATACTACACATAGCCACACATATATACACACACACTACACATGCACACACATACACACACACCTTAACCAATTCTGTTGAACACCCGCGTTACTTCTAGGTTTCTTCATTTGAAAACATTCCTAGAAATGGAATTAGTGAACCACAGAACATTTGCATCTTGTGGCATTTTTCTATAAACTTCTAGCTCGCCTTTCTCCAAGGAGGGTATCAGGGTACCCATATCCCAGTTCCTTCACTGATGGATCAGTTAGTTCTTGGGCCACAGTTTCTTTAATCAAGAAATAGAGTTTTTCCTTTGGTTCCTACTCATGAAGTATGTCTGCTGGTAGATAGAAAAGTTCACTGTTCTCTTTGCTCCTCCCCCTCTGCTACCTGTGGCATCCTTAAAGGAAGCAGTTGTCCTTCCCCAGATGAAGGAAATAGTGAAGAAGCCAAGCACTTTGTGGGAGAGCCATGAGAAAGTACAGAAATTTTGGGGTGTCTGGAGATTCTAACTAAACAAAATGTGGCTTTTAGACACCCAGGCACATTTACCTTACAAATGTTTGGTTCAGCTTAATAGAGATTTATGGAAAAGCTGTGCTAGACTCAAGAATACCCAGATTCCAAGGAACTCACAACTTCACAATAGATGGCCAAGGTTTGGTGGCCTGTGACCAGTTTAGCAAGAAGGGGTGCCAAGGAGGGAGAGGAATTCATTTCTGATGGCCAAGCATAGCATGTACCCACCCCCTCAGGCCAGGATACCTTCACTTGGGCTTTAGTTAGGAATTGATATGATTTAGATGTCACCAGTCCTAATTTTAGGTTCCTCCACTGTATAGCTCCATGGTCTTGAATAGGTTACCCTATCTGAATCCTATTGCCTCATCAGTAAAGGAAGTATAATCCTGTTTATTTCATGATCATCCTGAACACTAAGTATGAGAATGGAAATCTAGAATCTAGAAAAGTAGCCACCAGGACTAGGTGCCCCCCCCCACACACACACACAAACATAGGGAAGCATTGTGTCCTTTCTGTTTGCACAATATTGGACTCTGTCAAAGCCTCCTCATGGCTCATCTCATTTAAACCATCCTCCATGGACCTTTGCCATAGGAATCTTCCCTGTTGTAAAAACAAAGAAACCGTTGCAGATGGTAGATGAGTCTGAAAGATCAGGTAGCTAGTTGATAGAACAGATAAGACCAAAATACTGCACTTTTTACTTAAAGCTTAAGATAAGGCACTTTTCCCTAAAACTATCGTGTTTTTTTTTAAATAATTATTTAGTAGTTTCCTAGTTAATATATTTTCCTACCATGCACACATGATAGAGGGATATTTTCCAGGACCAAAAATGAATGTATTAAGGTTTGGCCTCATTCACCCTGTGTTAATCCTCTAGACGCACCCACACACACCCGACGTGCCCCTCTTGGCCTTTAGTTGCTCTCTGACACAGAAGGAGCCCCTCCTCTACTTTGTTCCATTTGACCCAGGCACCTTAGGGCAGTCCCTTTCCAAACAATCCATTTCTAATTGGCTGTCAGCAGCCCCTTTCATCACTGAGCCTTAGCTTAGCTGAGATTGGCCAATCCAATGTGGGCCACAAGCCTAAGCCCAGTTTGTAAGGCCAAAAGGTCATCACCTTCCTATATCATTGACCAAGCAGAGACTCTTCTAGGTTGGCTTGTATGGCAGCTGATTCCTTAGGAAAGGAAGCCAGGAAGTAGGCAGTTAGGTATGTAACACTGAACATTCACACACACAGGCACACATTTGCATACACACACATTATAGATACACACATTTTATTCCAGTAGTTTATTGAGTAGCTAATGATGCTCTAGACACTTGTGTTACATTACCTATCTCTTTTCACCCCTAGTTCCCATGTCCCCACTTACAGGGAAACTGAGGCTCAGAGATCTTACCTAGGTCTCCTTCTTAGTACATAATTACTTCCTAAGTAGCCACTTTCCTTCTGTCTCATCATTCTCTCAGTTGAGAAAGAGTGGCCAATGATCAGAAGCCTCCTCTGTTGACTGAAATGTATAATTGTTTTTACAATGGGAAAAGTTAGATATTATGATATTTAATTCAGGGCGTGAATAATTTTTATTGTGAAAAAAAAAAATGACGACCTCAGTGTTATTTACCCGCACCTTTACTCTCTGGCTCGTCTCACGCGACTTGCTTGACCTCAATACAATGTATAGTGCTTACTTGTCTCCACTAGCCCACACCAGTGCACAGCTGACACACACAGCCGATACTCTGCAGGTCACGGAGACCCTTAGGCCCCTCCAGAAACACAAGGAAGAGAAAAGAGAGCCAGGAAAATGGTCTGGAGTGCCACCAGAAAGCAGACAGAGAAAAAAGGCCACACTCACAAATAATCAAAGTAATGCAAATTAAAACAACAATGAGGTCTAATTTTTCACCTATTAAATTAGCAATACATTTTTAAAATGATAAGGCTAACAAGTACCGTGAAACTGATAACATACCCATTGCGGGTAGTTGGTGTAAATTGGGAAGCAATTTGGTAGAATGAATAAAAAGCTTTAGAAAGTGTTTATATTTGACCTCATGCTTTCATTCCTAGGGATTTCCACAAAAGCAGTAATACAAAAGGAAAGAAAAATGTGACATGTATTGCTAGCATTTAGAAAGAAAGAAAAAAAAAAAACACCCAATAGTGATGGGATGAGTTATTAAATCATTAGATGTCTGCTCAATGAAAATATTATGCATCCATTAAAATTATTATTATAATGACTGTGTGGCACCATGGTGATGCTTATATTGGAGAAAAACAGGATATAAAATTATGCATGAGCTGTGATTACAAGTAATTTTTAAATGTCTGCATATAGACAAAGTGAATGTGTGAAAATGAAAATAGCCATAGAAGAATGCAGAATGAAATAGGTTTTTCACTGTAAATTATTATGTTTATAGTTTCATGTGGATGGTTTTGGCTTCTTTGGTGCATCAGTGTCAGAAGGCCAAGTTAGCGTCTATGTCTTCTGCCTCTCCCAGGGGGCCAGGCTTAGAACGCCTGGGGCAGTTATTAACAGACCTCTTGGCTTGGGATGACGCAAGAGGGCAAAGGGCCAGGACCCCAGTGCAACCCTAGACCTTCCTTCTTCCATAG
Seq C2 exon
GACATCACGGAGAACGGCTGTGTGTCCTCTGCAGAAGATCCACTGCCAAAGACCATGCCATCCCCACAGGCAGAGACCCAGGACCCCAGACTTCGAGAAGACCGGAGACCAATCACAGTCCACTTTGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035392-Dennd1a:NM_146122:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.581 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0345514=dDENN=PD(12.5=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: