DreINT0008915 @ danRer10
Intron Retention
Gene
ENSDARG00000063578 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:4631386-4631770:-
Coord C1 exon
chr4:4631645-4631770
Coord A exon
chr4:4631465-4631644
Coord C2 exon
chr4:4631386-4631464
Length
180 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
GTGTGTATGTGTTTTCTCAGCTT
3' ss Score
7.26
Exon sequences
Seq C1 exon
GGCTACACAGACGAGCCGGTGTCGAAGGTGTTGTGTCATGTGGAGGACGGCTCTGTGGTCCAGCTGGACCGCTGGAATCTGCAGGTGGAGCGCTCAGTGGTCCAGCACGAGGAGGGAACACAGAAG
Seq A exon
GTAAACACTGCAGTCATCGTGATATACTGTATGAATATCTCACATTTACACAATGCTGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTTTTCTCAG
Seq C2 exon
CTTCCTTTAAATGTGTTCAATAACTACTTCAGCCTCGGTTTCGATGCCCACGTCACCCTGGAGTTTCACGAGTCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063578:ENSDART00000093005:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078119=DAGK_cat=PD(19.2=57.1)
A:
NA
C2:
PF0060914=DAGK_acc=PU(13.9=81.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACACAGACGAGCCGGTGTC
R:
TCTGGACTCGTGAAACTCCAG
Band lengths:
202-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]