DreINT0029768 @ danRer10
Intron Retention
Gene
ENSDARG00000077582 | ank3b
Description
ankyrin 3b [Source:ZFIN;Acc:ZDB-GENE-060621-2]
Coordinates
chr12:7771008-7771857:-
Coord C1 exon
chr12:7771756-7771857
Coord A exon
chr12:7771107-7771755
Coord C2 exon
chr12:7771008-7771106
Length
649 bp
Sequences
Splice sites
5' ss Seq
CAGGTCATT
5' ss Score
4.45
3' ss Seq
GTCTGTTTCTCTGGGTGCAGAAT
3' ss Score
7.32
Exon sequences
Seq C1 exon
ACTGACAGTAATGCCAGTTACCTCAGAGCGGCCCGGGCTGGAAACATTGAGAAAGCCCTCGATTATATAAAGACTGGTGTGGACATCAACATCTGCAATCAG
Seq A exon
GTCATTTATCTTCCTTTTTGTAAAAAGAAAAACAGTATTTTAGACACTGTATATAAACATTTAAATGTTTTTTAAAAGAAATTAAGGATTTTATTCAGCAAATATGCATTCAAACCCTAATAAAGAATGCATCAATGGAAAGCTTATTTCAGACAACGAACCCTTAAGATCCCATTTAAACTTGTAATATTAAAAAAAAAACATATTTAATGTATTTCTGTTCAAATAAACAGCCTTTTGGCGAGCATAATGCTTATTCACAGATATGATTTTATTTGTGTCTATAAGAATGTAAGCAGAACACATAAAAAGTCAAAAACATGATTATTTTTATGATTTAATGGCACTTTTTTTTAGAATTATTTTTTTTATATCATGCTTGAAATGATTATATTGAAAAACTGAAAAAGTAGAACAGTGAAAACTTATTTTATAATTTTTTTATACAGTTTTTGATGTTTCTAAAATGTTTAATCTAACAACATTAAAACAAATTTTGTAATATAAAATGTAGTGTGGTTGAGGACGGCCTAAATGAAATGTCAACGCATATAATAACATTTTCTGTTCATAAAATGCCTCATGCTGATCATATATGAATAGTCAGTAATATATTTAATGTGGGCTTTGTCTGTTTCTCTGGGTGCAG
Seq C2 exon
AATGGGTTGAACGCTCTTCATCTGGCTTCCAAAGAAGGCCACGTGGAGGTTGTGACGGAGCTTATTAAACTTGGTGCCACGGTGGACGCCGCAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077582:ENSDART00000149594:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138571=Ank_5=PU(72.2=76.5)
A:
NA
C2:
PF138571=Ank_5=PD(22.2=24.2),PF127962=Ank_2=PU(18.5=45.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAGTAATGCCAGTTACCTCA
R:
CTTTGTTGCGGCGTCCACC
Band lengths:
199-848
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]