GgaINT0041339 @ galGal4
Intron Retention
Gene
ENSGALG00000003135 | chAnk3
Description
ankyrin 3, node of Ranvier (ankyrin G) [Source:RefSeq peptide;Acc:NP_001264026]
Coordinates
chr6:8374189-8374875:+
Coord C1 exon
chr6:8374189-8374290
Coord A exon
chr6:8374291-8374776
Coord C2 exon
chr6:8374777-8374875
Length
486 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGAA
5' ss Score
1.26
3' ss Seq
TGTTTTTTGTTTTAAATCAGAAT
3' ss Score
7.23
Exon sequences
Seq C1 exon
TCGGACACAAATGCAAGTTACTTGAGAGCTGCTCGAGCTGGCAACTTGGAAAAGGCTCTTGACTACTTAAAAAGTGGAGTGGACATCAACATTTCTAATCAG
Seq A exon
GTTGAAAAATATTCTGATCAAATTTTCTGGATAAACGCCTCTCTCCTTTCTTGAATCTATCTATATATTTGCACTTAGTGTTAGCAATAACGTGTTTGATTTCAGATGAGTTGTGTTTGCGTATCTTACCCAATTCAAACTTTTACCCCTTACCAAGACATCATTTCAATTCCACTTGGAGAACATTATGCTATTTAACATTATCTTTCATTCCATTTGTGTTAGATCATGTCTTGGGCAGCACATATTGCTAGTATGAGATAGAGCTAGTAGACCCCAGAGCTAGTATATCATAACTCAGTTCATACTCTTTTCTTGCAATTTATTTGTTATAAGGTTCACATAAGAATAATTTTTGGAAGCAGTCCTCTCACTGGGACGTGATTTTTTCAGCTCCTGATGTGTTATTTGCTACAGTGGAAAAGCTATGCCAGTCTTTTAAGTTGCATTTCTTTGTTTTCCTTTTTGTTTTTTGTTTTAAATCAG
Seq C2 exon
AATGGGTTGAATGCACTCCATCTCGCTTCCAAAGAAGGGCACGTAGAAGTTGTCTCTGAACTGATACAGCGAGGTGCCAGTGTGGACGCAGCGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135:ENSGALT00000041033:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.265 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(28.3=76.5)
A:
NA
C2:
PF127962=Ank_2=FE(34.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGACACAAATGCAAGTTACT
R:
CTTTGTCGCTGCGTCCACA
Band lengths:
201-687
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]