GgaINT0041339 @ galGal3
Intron Retention
Gene
ENSGALG00000003135 | Q90717_CHICK
Description
NA
Coordinates
chr6:10035099-10035785:+
Coord C1 exon
chr6:10035099-10035200
Coord A exon
chr6:10035201-10035686
Coord C2 exon
chr6:10035687-10035785
Length
486 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGAA
5' ss Score
1.26
3' ss Seq
TGTTTTTTGTTTTAAATCAGAAT
3' ss Score
7.23
Exon sequences
Seq C1 exon
TCGGACACAAATGCAAGTTACTTGAGAGCTGCTCGAGCTGGCAACTTGGAAAAGGCTCTTGACTACTTAAAAAGTGGAGTGGACATCAACATTTCTAATCAG
Seq A exon
GTTGAAAAATATTCTGATCAAATTTTCTGGATAAACGCCTCTCTCCTTTCTTGAATCTATCTATATATTTGCACTTAGTGTTAGCAATAACGTGTTTGATTTCAGATGAGTTGTGTTTGCGTATCTTACCCAATTCAAACTTTTACCCCTTACCAAGACATCATTTCAATTCCACTTGGAGAACATTATGCTATTTAACATTATCTTTCATTCCATTTGTGTTAGATCATGTCTTGGGCAGCACATATTGCTAGTATGAGATAGAGCTAGTAGACCCCAGAGCTAGTATATCATAACTCAGTTCATACTCTTTTCTTGCAATTTATTTGTTATAAGGTTCACATAAGAATAATTTTTGGAAGCAGTCCTCTCACTGGGACGTGATTTTTTCAGCTCCTGATGTGTTATTTGCTACAGTGGAAAAGCTATGCCAGTCTTTTAAGTTGCATTTCTTTGTTTTCCTTTTTGTTTTTTGTTTTAAATCAG
Seq C2 exon
AATGGGTTGAATGCACTCCATCTCGCTTCCAAAGAAGGGCACGTAGAAGTTGTCTCTGAACTGATACAGCGAGGTGCCAGTGTGGACGCAGCGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135:ENSGALT00000004956:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.058 A=NA C2=0.005
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(28.3=76.5)
A:
NA
C2:
PF127962=Ank_2=FE(34.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGACACAAATGCAAGTTACT
R:
CTTTGTCGCTGCGTCCACA
Band lengths:
201-687
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]