MmuINT0015153 @ mm9
Intron Retention
Gene
ENSMUSG00000069601 | Ank3
Description
ankyrin 3, epithelial [Source:MGI Symbol;Acc:MGI:88026]
Coordinates
chr10:69271164-69271719:+
Coord C1 exon
chr10:69271164-69271265
Coord A exon
chr10:69271266-69271620
Coord C2 exon
chr10:69271621-69271719
Length
355 bp
Sequences
Splice sites
5' ss Seq
CAGGTCCGT
5' ss Score
6.47
3' ss Seq
CTCCTTTCTCTTCCCATCAGAAT
3' ss Score
9.93
Exon sequences
Seq C1 exon
TCTGATGCCAACGCAAGTTACTTAAGAGCAGCTCGGGCAGGGCACCTGGAAAAGGCCCTTGACTACATCAAAAATGGAGTGGACGTCAACATCTGTAACCAG
Seq A exon
GTCCGTTGTGGTTATTGTTACAGTTTGCTATTTTTGTTAAAACGAGTAGATTCCTTAAAGCTTCCCTTAGCTATTTGGCAAGATCTCTCTCCACTTGTCAGGAGGTTGGTTTCGTTGTTAAATTTTGTCAGCCCAATGTTATCCGATTAGTCTCCATCAAAGGGATGCCATTTGGTGACCAATGGCTGATAGTAATGGACCACCCTCCCTAGTTCTCACATTTTATTTCTGTTCCACATTCCTGTGCTACATTCACATGGGGGACTCCGGTAGGGGGCTAACTGAGGAGCAGGTGGCAGGCTGTGGACTATTGAGAACTCTGTTTTCAGTTCACTCTCCTTTCTCTTCCCATCAG
Seq C2 exon
AATGGATTGAATGCACTCCATCTTGCTTCCAAAGAAGGCCATGTGGAAGTGGTCTCTGAGCTGCTGCAGAGGGAAGCCAATGTTGATGCCGCCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069601-Ank3:NM_146005:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.258 A=NA C2=0.115
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(28.3=76.5)
A:
NA
C2:
PF127962=Ank_2=FE(34.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAAGTTACTTAAGAGCAGCT
R:
CTTTGTGGCGGCATCAACATT
Band lengths:
190-545
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: