RnoINT0017394 @ rn6
Intron Retention
Gene
ENSRNOG00000053288 | Ank3
Description
ankyrin 3 [Source:RGD Symbol;Acc:620157]
Coordinates
chr20:20259263-20259894:+
Coord C1 exon
chr20:20259263-20259364
Coord A exon
chr20:20259365-20259795
Coord C2 exon
chr20:20259796-20259894
Length
431 bp
Sequences
Splice sites
5' ss Seq
CAGGTCGGT
5' ss Score
7.53
3' ss Seq
CTCCTTTCTCTTGCCCTCAGAAT
3' ss Score
11.19
Exon sequences
Seq C1 exon
TCGGATGCCAATGCAAGTTACTTGAGAGCAGCTCGGGCGGGGCACCTGGAAAAGGCCCTTGACTACATCAAAAATGGAGTGGACGTCAACATCTGTAACCAG
Seq A exon
GTCGGTTGTGGTTGTTATTGTTCTGGTTTGGTATTTTCATTAAAACTCTCAAATTTCTTTCTTTTTTTTTCCTTTTTTTCGGAGCTGGGGACCGAACCCGGTCTACCACTGAGCTAAATCCCCAACCCCTCAAATTTCTTAAGGTTAGTGTTAGCTATCGGCAGGCTCTTCCTCCACTTGACAGGAGGTTGGTTTTGTTGTTAAATGTCGTTTGCCCAACCTTGTCCGATTAGTCTCCGTCAAAGGGATGCCATGTAGTGACTAACGGCTGATAGTAACAGGCCACCCTCCCTAGTTTTCACATTTTAGTTCCACTCCACATTCCCGTGCTGTGCACACAAGGGGGATTCTGGTAGGGCATTAACTGAGGAGTATGTGGCAGGCTGGTGAGAACCCTGTTTTCAGTTCACTCTCCTTTCTCTTGCCCTCAG
Seq C2 exon
AATGGGTTGAATGCGCTCCATCTTGCTTCCAAAGAAGGCCATGTGGAAGTGGTCTCCGAGCTGCTGCAGAGAGAAGCCAACGTCGATGCAGCCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053288:ENSRNOT00000077620:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=NA C2=0.028
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(28.3=76.5)
A:
NA
C2:
PF127962=Ank_2=FE(34.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAGTTACTTGAGAGCAGCT
R:
CTTTGTGGCTGCATCGACGTT
Band lengths:
190-621
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]