HsaINT0008155 @ hg19
Intron Retention
Gene
ENSG00000151150 | ANK3
Description
ankyrin 3, node of Ranvier (ankyrin G) [Source:HGNC Symbol;Acc:494]
Coordinates
chr10:62038808-62039397:-
Coord C1 exon
chr10:62039296-62039397
Coord A exon
chr10:62038907-62039295
Coord C2 exon
chr10:62038808-62038906
Length
389 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
3' ss Seq
TTTCCTTTACTTTTAATCAGAAT
3' ss Score
7.64
Exon sequences
Seq C1 exon
TCTGATGCCAATGCAAGTTACTTAAGAGCAGCTCGAGCTGGACACCTTGAAAAGGCCCTCGACTACATAAAAAATGGAGTTGACATCAACATTTGCAATCAG
Seq A exon
GTTAGCTGGAGTTATTATTGAATTTTTTACTTAAAATTCTAAAAATCCAGACTTCAAGCTCCTTAAAGACTTCATTTATTTGTGGGGTTTTTTTCCATTGAATTTTATCAGCTTGTCATTGTCAAATTATTCTCTGTTAGAGGAACATTCAGAAATGTCAGCATATGTCCCTTAATAATTAATTTCTAAAATTTAGTAAATAATGATAACAGAACAACCCATCCAGTTTTGAAGTACTTTGATTCCTAATTCAAGATTCAAGTTCCTGCACAGCATACATGCAAGTGATCATCAGGTGGGACTTTATAATATCTCAGGAGTTCTTGGTCGGTTGTTTACTGCTCTATTTTCAACCTGCTGAGTAGAGCTTTTCCTTTACTTTTAATCAG
Seq C2 exon
AATGGGTTGAACGCTCTCCACCTTGCTTCCAAAGAAGGCCATGTAGAGGTTGTTTCTGAGCTGCTGCAGAGAGAAGCCAATGTGGATGCAGCTACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151150-ANK3:NM_020987:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.210 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(28.3=76.5)
A:
NA
C2:
PF127962=Ank_2=FE(34.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAATGCAAGTTACTTAAGAGCA
R:
GTAGCTGCATCCACATTGGCT
Band lengths:
191-580
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)