DreINT0033716 @ danRer10
Intron Retention
Gene
ENSDARG00000074329 | arvcfa
Description
armadillo repeat gene deleted in velocardiofacial syndrome a [Source:ZFIN;Acc:ZDB-GENE-091113-43]
Coordinates
chr10:484407-488429:+
Coord C1 exon
chr10:484407-484572
Coord A exon
chr10:484573-488357
Coord C2 exon
chr10:488358-488429
Length
3785 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
3' ss Seq
TGTTTGCTGTGATTCTTCAGGCA
3' ss Score
8.02
Exon sequences
Seq C1 exon
TCGGTGGAGAACTGTGTCTGTATCTTGCGTAATCTCTCCTACCATGTGCACAAAGAGGTTCCCGGAGCTGAGAAATTCCACATCCAGGCGGCCAGTCACAATGCCAAACCAGCAGGACACCACAAGAAGGACAAGCCGGACTGTTTTGGCGGACGGACAACCAAAG
Seq A exon
GTTAGACATTCACTGAAACAACATCCAAACTGTTCAGAAGAAAAACAGACATTCGTCTTCATATGAGCTGTTCACATGGCACAAATGTTGGGGCGCAAGTTTAAATGGTAGGTGCTTTGCTACAGCATAGGTCTCAAACTCAATTCCTGGAGGGCCGCAGCTCTGCACAGTTTTGCACCCTGATCAAACACAGCTGCATTTACACTGCGTGGTTCAAGTGAATTTCCGATTTCCTCAATTCCGATTTTTTTCGGTCATGTGGCACAGATCAGATATGGCCCGTGTACGTGTAAGCAGGGACAAATCACATGGATTCCGATTTCAGTAATAACGGTAGACTAATTACCTCAGATAAACGCAGCGAACACAAACATAAACCCTGTATCAGAGCTGCAGCAAGGGTTTGTCAGTCTGTCATCCTCTGAGAGAACGGTTGATTGTGCAGCGCCACTCTATCAGATTCAAGAACTGTGAAGAGATGATGACCAAACACATCCACTAAACAAACAAATACACTTCTTGTCTATAGTCTTGTTGTGGATCCCGGGTGTAAGAGCAGCAGATGATAGCTTGACTTCTAGTTGAGCATTTAGAAAAGTGTCAGAAGGTGAATTTCTCTGATGAATCATCTCTTCCAATACTGCAGAAGACCTACTGGAACCAGCATGACCAAGATTCTCACAGAAATCAGTCAAGTTTGGTAATGGAGAAATCATGGTTTGGGGTTTATTCAGTGTGAGAGATCTGCAACATCAACAGCCTGAGGTATCAAGACATCTGTGCTGCCCATTACATTACAAACCACAGCAGAGGGACAATTCTCCAGCAGGATAGCGCTCCTGCTCATACTTCAGCCTCCACATCAAAGCTCCTGAAAGCAAAGAAGGCCCAGGATTGGCCAGCCCAGTCACCAGACATCAACATAATTGAGCTGATGAAGGAGGAGGCGTTAAAGATGAACACAAAGACTCTGGGAGTCCTGCTGAACGCTGTCTTTGCCATTCCAGATGACTTTATTAATCAGTGATGTGAGTCATGTCAGAGATGTATGGATGCAGTCCTCCAAGCTCATGATGGAGTCAGACACAATATTCATTCTGTCTCCACTGCAGCAGGACTTTATATTCTATACTGGACATTATTTCTGTTCAGTGATGAGACTTTAGTCTGAGCAGAGTCAGAACCTAACCCAGCGCTTTACAAATAAACTTCAATTGAATTGAATGGTTGCCTAGCAATGACAGACACCACAGGAGCATGAGCACAATGAATGTTGAAATTGGTAACGAAAGCAACATGCGGTCCAATAATATATCCTCATCATCACAGACAGCTCAGATTAGCGTCTAATAATTTAGGCAGCTTTGTGCTGCTGAAGTTCAGTAGTTCACGTTCGGCTCTATTCTGAGATGAAATGCCACTTTACCCATCGCATCAATTCTTAATGCGTCAAATCAAGTCTTGCCCTACATTTTTTGTTCCTATTGAATATTCTGCTTCACTCATGAGTGCATTACATTTTAAAGCAAATGGGTCACTCAAAAGTTTAGTGTTGTAGAGGTTTGTGATATTTTGGAAAGTAATCACTTCTGCTCACTAATGCTGCCTTTACTAGATCGAAAATAGAGTAATACAGTGAAATGTGGATGAACTGTTTCTGTGTAAATATATTGTAAAACATCATTCCTGTGATGTAAAGCTGAAGATGTTGGACACCTGGGGTTGCGGAATTTGCATGCCAGAAACTGCAGTACCTTAATGTGGTTCTTGAGCTCACAAAGTCATATTTTTATTGACCTCATTTCTTTCGGGGAACCATCCAAGCCCCATGAGTTCATATTGTCAATGACGGCAATAGTTTATGGCACTGACATACTCTGACACTGTAGGCTTTTAATGTCTACACTTACTCCTCACAGTTACATCACTAAAGGACATCATACATCCTAAAGGACTGACCTCGCCCTAAACAACTGATAGTCTCTCTCTAAATGACTGATAGCCTGCCCTAAAAGACTGATAGTCCCGCCCTAAAGGACTGATTGCCCCACCCTAAAGGACTGATAGCTCCGCCCTAAATGACTGATAGCCCTGCCCTAAAGGACTGACAGCTCCGCCCTAAATGACTGATAGTCCTGCCCTAAATGACTGATAGCCCCACCCTAAATGACTGATAGCTCCGCCCTAAATGACTGATAGCCCCACCCTAAAGGACTGACAGCTCCGCCCTAAATGACTGATAGCCCTGCCCTAAAGGACTCATAGCTCCGCCCTAAAGGACTGATAGCTCCGCCCTAAATGACTGCTAGCTCTGCCCTAAAGGATTGACAGCTCCGCCCTAAATGACTGATAGCCCTGCCCTAAAGGACTCATAGCTCTGCCCTAAATGACTCATAGCTCTGCCCTAAAAGACTGATAGCCCCATCCTAAATGACTGATAGCTCCGCCCTAAAGGATTGATACCCTTGCCTTAAAGGATTGATAGCTCCGCCCTAAATGACTGATAGCCCTGCCCTAAAGGACTGATAACCCAGCCCTAAAGGACTGATAGCTCCACCCTAAATGACTGAAAGCTCCGCCCTAAAGGATTGATAGGCCTGCCCTAAAAGACTGATAGCTCCACCCTAAATGACTGATAGCTCCGCCCTAAAGGATTGATAGCCCTGCCCTAAAGGACTGATAGCTCTGCCCTAAACAACTGATAGCCCCGCCCTAAAGGACTGATCGCCCCACCCTAAATGATTGATCGCTGTGCCCTAAAGGATTGATAGCCCTGCCCTAAAGGACTGATAGCTCCGCCCTAAACAACTGATAGCCCCGCCCTAAAGGACTGATAGCCCTGACCCCTGATAGTCCACTGTTTAAAGCAAGCACTACTACATACATTTCAAAATAAGAGAAATATTGTGATTTCCTGGTGACTGATCTTCGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATAATATTGTAACAGTTTCCAGATTGAACAGATGATCTATGTTTAAAATATCTAAATGAAAGCAGTGTGCAGTCATGTGTTGCCAGTCTTTCTCCTGTTGTGTTGTGATACTCGTGTGTCTGATGAAGGTTGTGTGTTTTGTGTGTTTCATGGCTGCGGCGCTGGTCTCTCCGCAGAGGAATGGTTCCATCAGTGTAAGTGCAGAATCTTCACACTCTTACCGCAGTTCATTCACACACTCTCAGTTATTCAGCGCTCCCACCTGACGCCCACCACCACTCCCACACACACATCAGCCTGTGGACAAACAAAACACAAGTAGTTTGACAGGTTGAGACGTTGCTGATGTCATGAACACACTTGTTTGTAGAGCAAGCAGTTGGACTGTGTTCTGCTGTTTGTTATTCCTAGTTATTTCTCCCACGGGCAGCTGAATAGCAAGTCCTAAAACAATTGCAGAGACAAGCGCTCTTCCGCTTCACAGAATAAGCTCAGTAGTCGTAGGTTTTCACTTTAAAACAGCACTTTAGACTGAAAATGCTTCTCGCTGGTTTATAAAAAGCTCTCCGTCCACACCATACAGCCTGAAACACGACACGTGACCATTCACACTCTCTGGACATGTACATATTTTATCAGGTCTGCTTTGACCCTGTGGTGAATACCTGCTATTATTCACACTCTGGACAAAATAACGTGTAGTTTAACAAGTTAAGATGCTGATGTGTTTGCTGTGATTCTTCAG
Seq C2 exon
GCAAAAGACACGGAGCTGTAGAGAAGAAGAGCGGCGGTGCTGATCTGCCCAAGAGGAGTCTGCCGATGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074329:ENSDART00000145220:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.440
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0051418=Arm=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]