DreINT0034493 @ danRer10
Intron Retention
Gene
ENSDARG00000023903 | atf2
Description
activating transcription factor 2 [Source:ZFIN;Acc:ZDB-GENE-030911-8]
Coordinates
chr9:2348113-2350894:+
Coord C1 exon
chr9:2348113-2348182
Coord A exon
chr9:2348183-2350797
Coord C2 exon
chr9:2350798-2350894
Length
2615 bp
Sequences
Splice sites
5' ss Seq
CAGGCATGT
5' ss Score
2.05
3' ss Seq
TCAGTTTTTGTCTGCGACAGCGA
3' ss Score
5.99
Exon sequences
Seq C1 exon
GTGGCAGACTGAAGCTGTGAATATGAGTGATGATAAACCGTTCCTCTGCACTGCTCCTGGCTGCGGACAG
Seq A exon
GCATGTGATCTCTCTTAAAGCTCTAACACACATTTAAAGCTGCAGGGTCACATTTCTGTTTGGGGCGGTTTGCACCAAGTTTGTTAGTTTTGCAATTTTTAATTGTTTTTTATTTTGAAATATGCTATACATTTCAGTTTGTTTAATTAATGGAGTTTTAATTTTTATTTTGTGATCAGATTGCTATTTTGTTATTCATGTTGAACAGAACACGTCATCATCAGAACAGCGTCAACCAGAGCAAAGTTTAGCATTAAGATGAACTCTTGTTCAAACCTCTTAAAAGTCATAAAATAAAATAATACGTAGTTTTAACAGACACTGAACCCAAAACTACACAAATTCAACTTAAATGAATAAAAGTAGAAATGATAAAGAAATCAGACAAACTTCCTCATATCAAAGATCATGTGTGTAGTTAAACATGTTAGGAAGTGGTTATAAAATATTTAGAAAATTAAGGAATGTGTTTATTTGGCCAGCGCGGTGGCACAGTGGGTATTGCTGCGGCCTCACAGCAAGTAGGTCACTGGTTCAAGCCTCAGCTGGGTCAGTTGGCGTTTCTGTGTGGAGTTTGCATGTTCTCCCTGTGTTGGCAAACATATGTGCTATAGGTGAATCGGGTAAGCTAAATTGTCTTTAGTGTATGAATGCGTGTATGAATGACTGTATATGGGTGTTTCCCGGTGATGGGTTGCATATGGAAGGGCATCCGCTGTTTTAAACAAATGCTGGATAAGTTGGCGGTTCATTCCGCTGTGGAAACCCCTGATTAATAAAAGGACTAAGCCGAAAAGAAAATTAATAAATTAATAAATTTGTTTGTTTATAAAAGTGCGTCTACAGATGTTTTTCTAAACTGCCACAGGTTTTCTTTCTACTATGAGTGCCTTGTAATTCTGAAAATTTATATTTATTAATTTATTAAATTGTTTGTTTATTATTTACTTAATTAGTTTTTATTTTCAGCATGATAATTAGTCGCTAATTGCAGTGAAATGCTGTTTGGAGACCGAAACGCAGGCAGTCATGAAATGGCCTCCACAGTGTCCAGACCTGAATATTATAGAGTCTGTATCGGATCATCTGGACCAGCGATCACCAACATGGTGCCCGCTGACACCAGGTAGCCCGCGAGGATCACATGAGTGGACCTGTTATAAAATTAGCTTACCATAGCAACACAAACCAGTAAGCTGCATCTAATTTTTTCTGTAGCTATTCTTTTTAAATCACACTTGCATTGGTTGATATTTATCTGTTTCCAATCATTGTTGACAACTATTGAGAAATCATTAACATGATCAGTGTCTTCACATAGATGAATATCATTAATTAATAATAACATATAATTAAAAGTAAATTGAGCAAATTTGTTATTAGGAAGTGTGTATCAAACTGGTAGCCCTTCACATTAAACGATACCCAAGAAGTAGCTCTCAGTTTCCAAAAGGTTGGTGACCCCTGATCTGGACAGAAAAAGAAAGATATGATGCTTTAAACCCAAAGAAGAACTCTGGAAAGTGCTGAAAGAAGCCTGATATTATTATTACACAGCACATTAGTTCAGAAAATGTCAGGACAATAAGAACAACAGCCAAGAGAAGCCACATTAAACAGACTTTAGCTTACAGAGGAAATGTTGAGTTGTTGTTGTTGTTGTTTTTTTGTACATATTTCATATATTCTTTGTTTCGAATAAAGAGACTTAATAATTATATTGTGCAAAAGTCATAGGCCAGGGGTGTCCAAACTCGGTCCTGGAGGGCCGGTGTCCTAGAGAATTTAGTTCCAACCCTAATCAAACACACCTGAAGCAGCTAATCAAGCTCTTACTAGACATATTAGAAACTTTCTGGCAGGTGTGTTGAAGCAAGTTGGAGCTAAACTCAGCAGGACACCGGCCCTCCAGGACCGAGTTTGGACATCTCTGGCTGCGTCCGAAACCGCCTACTACTCAGTAGGTACTGCATTTGAATTTAAACGTACTACTCGGCCGTTAGAAAAGTTCATTCTATACAGTATGAATGTGAAAAGTATGAATGGAATCCGGACGTACTACATCCGCCATTTAGTCATGGTCATGTGACCTACTCACGTCAGTTGCGTCGCCTCACTTCCATTCATGAATTCTCTCACGGGGCATTATGAAATAGCGTAGCGTGCATGGGATACACACTTCAGAATCTCGCCGGAAGTAGTAAGTCATCCGAGTACTTCTCGCATACTGATTTTCGAATTCTATGAATTCGGACATACTACTCGGCTCGCATACTGATTTTAGCGTACTATATAGTATGGAAGTATGCGGTTTCGGACGCAGACACAGTTCTAGTATATCTACTAGGAGCTTGATTAGCTTGTTCAGGTGTGTTTGATTAGGGTTGGAGCTAAACTCTCCAGGACACCGGCCCTCCAGGACCGAGTTTGGACACCACTGTCTTAGGCCAACAAAGCTGCTATCGTGCTTAGGATTTTTGCACAGTACTATATTATTTTTGCCAGTTATTATTTCATTTCAGTTTTTCAGTAAAAGGGAATTTTTTTTAATGATATTTCAGTTAACCATAATGTTTTCGACCAGTAGTTTTAATCTCAGTTTTTGTCTGCGACAG
Seq C2 exon
CGATTCACAAATGAAGACCACCTGGCGGTGCATAAACACAAGCATGAGATGACCCTGAGGTTCGGACCGGCGCGCAGCGACAGCGTCATCATTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000023903:ENSDART00000135180:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.818
Domain overlap (PFAM):
C1:
PF138941=zf-C2H2_4=PU(34.6=56.2)
A:
NA
C2:
PF138941=zf-C2H2_4=PD(57.7=45.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]