DreINT0041192 @ danRer10
Intron Retention
Gene
ENSDARG00000041864 | capn3a
Description
calpain 3a, (p94) [Source:ZFIN;Acc:ZDB-GENE-040912-97]
Coordinates
chr17:45358666-45363385:+
Coord C1 exon
chr17:45358666-45358724
Coord A exon
chr17:45358725-45362348
Coord C2 exon
chr17:45362349-45363385
Length
3624 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TATTTTCTATTCCCCCCCAGTGG
3' ss Score
8.8
Exon sequences
Seq C1 exon
GAGCATTCCAGGCCTTTGACCAATGTGGAGATGGCAGCATCAGGCTCAGTGTACTGGAG
Seq A exon
GTGAGTGATTTGGATCATTTAACAGAGTAACGTCTAAGATCTCTACATCAGTACTGTGCAAACTTGGTCATGGTAGGTTCCTACAAAGTTTAGCAATATCCTGCCTCACTCCTCTGAACTCCATCCTTCTTCCCAGAAACCAATCGTGCTCAGCCATCCTGTAAGATGTTTCAATCATTCAACAATCATCAAATCAAACACACATCAGTGAATTTTTCATGTAAAGTTACTGTTAATGTGGTTTGTTTTCAAAGGTTCTGTACGTTTGCTGTAATGTACTTTTCAGCACAAACAAAATAGCAGTAAATACTGAAACAATTCATAATCATGAGTAAAATAAAATAAAAATACAGACATAGTGGAGGTTAAAACTATGACAATAACTACCTGTAATGTTCAAGAATCTGGACGCTGAAGCAAAATCAGTGATGTACAGTAATTGATGTTACAGTTCAGACGGCAGAGAGACGCCACGTTGTGTTGCCAAAACAAGCATAGAGTGTTGCTTTTATAATTTTAATTTTACTGTATATATATATATATATATGTATATATAAATGTTTTTTTTAAATAATATTCTTGTTTTATATTGGCTAAAATAAAAGCTGTTTTTAAAGGGCTACGATACCCCCTTGTTTCAGCAGGGTGTTTTTACACCTCTACTTTGGAAAAAGTGAGGAAAGTGGGCTTGTCCAGCTCTTTTTAGGGGGGAGTGTTGGAGGAGCAAAAGAGGGAGGGTCTGTAAATAATTTGCATAAAAATGGGAGTTGGCATTTCCCGGAAACTTAGATGCACACGGCAGGTAGCATCAGAAAGCTGTGTGTGTTACAAAATGTTTCCTGTCACAAAATGCAGTGAAAATCCTACACGACGGTAAGTTTGATTGTTGTGCTAAGATGTTTATACTCGGTGTTCGATACGAACTAACATTGCCATCTGAATAAACAAAGACCACTGGTTGCTCACTTACCAAATCTGTAGAGACAGGACAATTAACACCAACAAGAGCCGCGTCTTTATTAAGAGGAGACGAGCAGCAAATCCGGATCTCACTATTTCCAGATGAGAAAAGCTCAAAGGTAAACAATGTTCTTGAGACACGTATTGTTGTCGAGCGTCCCGTGCACTGTAATCCACACGTGAGTCCAGCTGCGCTCTCATAGAGAGAAAATGAAAACAAAACCTTCACTGTAGCAAATTATAAAAGCAACACTCTATGCTTGTTTTGGCAACACAACGTGGCGTCTTTGTGCCGTCTAAACACTGTAACATTAATGAATATTAATGAAGTTGCACAATAGGGCGCGCTGATTGATTTGAACCAAGCCTTACTCATACATTAATGCAGCACACTCAAAAACGTAATAAGGCACCCTCCGGTACAGACCTCCAGTCTACACACTGGAATACACCCTAAGAAATTCATGGTCGTGACGCAGCTTCAAAAATTTGTTTCAAACCGAAAGTACAAATTTGCTCGAAATAATGCAAAAACAACCAATTTTCATTTTTTTGTGAAATATATGTTTCCTAATAGCGTTTTAGCAGTGTGGGACACATATACGACTGTCAACAGGTCAAAACATGTGTTTTTGTGTTTCGTGACCCTTTATTGTTTTCGTAACCATTTTAAGGTGCCTAATTACCCTAACTTGCCTAATTAACCTAGTTACGCCTTTAAATGTTACACTAAGCTGCATACTAGTATTATGAAAAATATCTAGTCAAATACTGTTTACTGTCATCACGGCAAAGATAAAATAAATCAGTTATTAAAACTATAGAAATGTGTTGATAAAATCTTTCTGTTAAACAGAAATTGGGGAAAATATAACTCCGCTTTAACTGAAAGCTGGAAATGCGTCTCTCATATAGCAACCTCTTGCGACAATCTCTTCAATGCGGCGCCTCGCGGTACTTGCAAACAAGTCATTTAAATCATATTTATTATCATTTGACAGTAACAGAGGAACATCGACCAATGTAGCAAAGTAAAAGTAATGATTTTTCTCTAATAATTTATTTGAGTAAAAGTACACATTTTTAAATGTACTCTAAAAGTACACGTTACTCAACAATTTTAATCAGGTAAATGTATTGAAGTAAATGTAATTCGTTACTACCCACCTACTTTATCAGGCATGGATATATAGATATATATTAGGGCTGTGCAATTAATCGAAAATTCGGTTTCAATTTCGATTGTTGCTTCTAACGATTACGAAAAAACATTAATCGAGATAAACATTTATTCCATCATATACCGTCCCCTTTCCAGTTGTACACATTTGTTGCTCTGCAAAGCTCAGTTCCTCGTGAAAATGTGTAAAAAGCATGTGCTGTAATGTAACTTTTGCAGCATGGGATGCGCATTATTCATATTTTTAAAAGCGTGAAAGAGCACATGCTGTTGCTAACGCCATCTTAATGAGAGCGCTTTTATGGTCAAATACATGCACATTTGTGTCAGAATGCGGTGTTTAGAGATTTTTCATATTAACCCTCATTTGTGTTATACACAAACGAGTTGAGAATCAAAAGACACGTGAAAGAGAAACCATATCAGAGCCGCACTATTCTTAAAGTGACAGCGTGCAATATTCCTGCTGCCGACTGTTTTTATTATTAATCAAACAACAAAAGGAGAAAATGCCTCACTGCTCTTGTCTGAAGGACTTTTGTAGCTGAAGTTTTTTTTTTCTTACAGTGCGGATGCTTGAAGCACAGTTTAAACATAACAGATTTAATAACTCATTTCTAATAACTGATTTCTTTTTATCTTTGCTATGATGACAGTACATTATATTTTACTAGATATTTTTCAAAATACTAGTATTCAGTTTAAAGTGACATTTAAAGGTTTAATTAGGGTAATTAGGCGAGTCATCGTATAACAGTAGTTTGTTTTGCAGACAATCAAAAATATATATTGTTTGAAGGGGCTAATAATATTGAGCTATTAATATAGGTTTCAAAATATTTAAAACTGCTTTTATTTAAGCCAAAATAAAAAAAATAAGCCTTTCTCCAGAAGAAAACATATTATAGCAATTACTGTGAAAACTTCCTCTGTTAAATATAATTTGGGAAATGTTTATATATATATATGTAAAAAAATAAAAAAATCACTAAAGGGCAAATAATTTTGACTTCAACTGATAATCGTTTTGAATAACCGTGATTACAATTATGACCAAAATAATCGTGATTATGATTGATGATATGATGATAATTGATTTAACACACACACACACACACACACACATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAATATATATATATATATGTATGTATATATATATATATGTATGTATATATATATAGCGATCGTGATTTTTGAAAGTTTAAAAGTACTTCGTAAACGTTTATTATTACCATATGTTTAGCCTCCCTGTAGCCTCCTTGTTGTAAATAGATTTTAGCCAAAGATCATAAGAATCTTTTAGGATTTCCAAAATTTGACCAAATCATGGATGAAATCACAGTTTAAGCCATGCTCTAATTTCTAATGTTAAAACCTTTCCATGTGATTAATTTCAAATTCTGCCTATTTTCTATTCCCCCCCAG
Seq C2 exon
TGGCTCCAGCTAACCATGTACGCGTAGGCAAGCTACAGATCCAGGTGAGCCCGGACTTGGCAAGGACCAGAACTACCAGCTTTTACCTCAACACTCAATGCTGCCAGACTACTGTTACCTCTTTCTCTGTACCTCAGCTCAACACGACTGCCCCTCTACATTTATCATTTATAGAGGGTAAGACGGGTCTAATGTTGGCGGGCAGCACATTTGAGGCAATCTTTCAGGGGCACTGTGCGCAAGCAGCTTTTGAGGCATAAGTCATCCTCAGACGATCTTCTGTCATAACTTGTTCTTTGAAGTCATTACACATGAACTGCATTCAGTTTGTCTACACTAGTGTCACAGGCAGCGTTTCTCGCTTTTCCTCAGCTAGCCTCAAAAACGCTTATGTATTATAGCCCTGAAATTCCTCTCTGCTATATGCTGATGGAGCCAATAAACTATAGATAACAATATAAATAACTCAATAGTTAAAATAGGAAGGAATTGAAGTCAAGTAGATTTGGATATAACCTTCAACAATATCACTTACTGATACAACTGACTACTTAAATTGACCTTTCATACTGAAAAACAGCCAAAATTTGATCCACATTTGAATGCGGAGTTAGTTCTACACTTAGAAATCATGACAACATCCCTTTATCAGAGAATGCCTTTCCATCTTCACCTCGACTCGACGTGCTGTCCATCCCAACTTCTCAGTCATGATTTGGTGATATCATTTAGGAAATAAAGCATACATCATTTGTTCCCCCTTTCAAATCCTGGTTGTTTGGGAGACAGGAACATGGTGAAGAAGGAGGATCATAAAAAACTGAAGGAGGAGGAGAATCATGGATCTCAAAACCTCAAAGCTCATGATGGACGGCAACATTCAGGGTCTTACCTTAATTACTGTGGGTGAAGATATGGGTCGAACCTAGGCTTTTTTTGTGTGTGTGTGCTTGACCCTCATTTAACCTATTGTACAAATGAGTGTACTGACTTTACCTTGTTTAACTGAATAAATCATTGTGTAGTTCTTGGCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000041864:ENSDART00000148667:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(20.2=100),PF144351=SUKH-4=FE(30.6=100)
A:
NA
C2:
PF134991=EF-hand_7=PD(4.3=40.0),PF144351=SUKH-4=PD(9.7=60.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]