DreINT0041199 @ danRer10
Intron Retention
Gene
ENSDARG00000041864 | capn3a
Description
calpain 3a, (p94) [Source:ZFIN;Acc:ZDB-GENE-040912-97]
Coordinates
chr17:45344961-45350122:+
Coord C1 exon
chr17:45344961-45345169
Coord A exon
chr17:45345170-45350085
Coord C2 exon
chr17:45350086-45350122
Length
4916 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
GTTTGTTGGTTTCTTCTCAGGGA
3' ss Score
8
Exon sequences
Seq C1 exon
ATGCATGGAAATAAGCAGCACATGCAGAAGGAGTTCTTCATGTCTACCACCGCTAAGGCTCGGTCCAGGGCCTACATTAACCTGCGCGAGGTCACCCAGCGTTTCCGTCTGAGTCCCGGAGAGTACGTCATCATTCCCTCTTCTTACGAGCCCCATCAGGAAGGCGAGTTCATCCTCCGCGTCTTCTCTGAAAAGAGAAATACTTCTGA
Seq A exon
GTGAGTGAGCGCTGAAGGGATGGGAGGGCTTGTGTGTGTGTTTTTTAAGCAAAATAACGTCTGAATACATTTTTACTCACATTAATTTTTTTAATCAGTATGTCATCTTGCATCCTTAGGATACATTTGCTTGAGAAACAAAATGAACAACATGAACACACTGTCAAGTAAATAAATACAAATAATATACTCAGTCAGTTAACGTTTGCTTAAAGGGATAGTTCACGCAAAAATGTCGATTCTGCCATCATTTACTCATTCTTCATTTGTTCCAAACATGTTGGAGTTTTTTCTTCTGGTGAACACAAATGCAGATATACTGAAGAATGTTTAGGGAGAAATCAGCCATTGATTTTCATAGTATGTTTTGTTCTTATTATGGATGTCATTGGCTGCTTTTTTTCAGCATTCATCTCAATATCTAGTTTTTTTGTACAAAAGAAGAAAGAAATGATAAGTGGTGAGGAACTTTCCATTTTTGGGTGAACTATCCTTTTAATACAACTAATATAAAATTCAAAAATAAAAGGGGTCAAAGATGAAACATCCTATATGACTTAAAGTCACCATGATATTATAAGTCAGTCTTCTTATTTTTATATGTACACCGTTGTTCTTGTTCTAATCAATGTACAGTTAGGTCCATAAAAATTTGGACATTGACACAATTCTAACAGTTTTGGCTCTGTACACTAACACAATGGATTTGAAATTAAACGTGCAATTTAATTTAAGGGTATTTACATCCAAATCAGATGAACGCTGTAGGAATTACAGCAGTTTGCATATGTGCCTCCCACTTGTTAAGGGTCATATGCAAGATCACTGTAAGGATAGTTTACAGATTGACCCAAACAATGACCAGTCTGGTAGATGAAGAAGAGCAGGAGTCACAGATTTAAATAAATAAATCAAGTTTACTGAAGCCAGCTTCAACACTCGCAATGAGTTCCTAGGCCGCTCTGCTTACAATCACCAATCAATAGCAATCATACTCTCGAATAACGTCATTAACTGCGTCACACATACAGGTGTCCTAACCTGATTGGTTAAAACACAGATAGACTAGGAACATTTCCACGTGGGGTTTGTGCGTATATTCTGAACAATATCTTAAGCATGAATGTCAGACATCCCTTAGACTGATTAGAGCTGGCTCCAGACCTGTGAAACGGATCAACAATCAAATAGAACACACACACTTAAAGTATAATCTGTTTCTTATCCAAGGCTGAGTGTACTGTCAACCGTCTTTATCGAAACTGGTTAAAAACCGGTATCATCTACATTTAGGCAGTTATATTCTTACTACACAAACTCTATCTTGAATAAAAAGTAGAATCCCGTTAAAAGATTTAACTGTAAAAATAGCAAAATCACTTTAGACATTTTAGACAGTATTAAATCCTAGAAATAACAATGGAAACAGTTGCTTCCAGTCCTCAGCCCTCAGTTCCACTCAAGGTCTCCATGACCTCTGACCTAGTTTGCTGGCTCCTGAAAATAGGTATAAAGAGACAGGCAAATGCACTGAACATTCTTATATTAAGCAATGTGTTAACTTATTCATTAATTAAAATCAATTCACAGTTAAATACTGAGAAACAGGAGGATGAAAAGGATAAACGTTGGTCTATGATGAGATGGACTGGAAAGCAGAAATCCGAATCCTTCATCATATGTGCAAACTGTTGCAGTTATTACAGTGTTCACCTGATTTGCACATAAATACCCTCAAATTAAAGCTGACAGTGTGCAGTTAAAGCACATCTTGTTTGTTTCATTTCAAATCCATTGTGTTGATGTATAGAGCCAAAAACATTAGAATTGTGACGATGTCCAAACATTTATGGACCTAACTGTATCTGTGTGCTTCATTATTTTGTAAAAATTAATATGTCTTCATAAACGTTAATCAAATACCATAACTTTCCCTCCCCCAAAACAACTTTCTTCCTTTTCTGGTTTCATGGAATTCCTATTAGCACATTTTTCGCTAATAAGTCTTCGTTCCTTTTGTTAGCAGTGGTCATCTTTCAACAATCCAATCAGTTCCCAAAAGAATGAAATCATGCACCGCCCTATATATAGTACACATTTCATGACCATTACAATGGGATGGGTTTCGAAACTCTGTACTTCGTTGGTATCGGTGCTAAATTATAAAAGACAGAAGTATCAATAAGCTCTGACGTTAACAGTTCAGTTATCGGTACTGGATAATTATTGCTGAATAAACATTACATACAGTTGCATAATTTAACTGATCAACCTTTTCTAATTTGCGCTATTTGATATTCGTCTGCACAGTTGGCAGTCTCACATGAGAAATGTCGAGTGTGTCAAGTATAAAAGCTTTCGCAGTTCTCGGCTGTGCGCGCACACTCAGCAGAGGCTCGCGCCAAGCGCACACAGAAGTTGTGACAAAGACTCGCACGCACACGCAGTTCATAAGTTTGCAAAGTGGCGGAGAGAACCAAACAGATTGTATTTCCTGAGTGGACACCGACAATGCCTGTTGCAATAAAGACAACATTTTTTTTTTCTTTTACAAGCGGAAACACAAGCAATCTGGCTAGGCATCTTTAAAAGGGTATTAACTGCAGAAAGAAAAATGAAAACTTTTCGACTGCCAAGCTAAAGGTACATCATCCACATCGGAATGCCAGCAGTAAATCACATAAGGTTAAGGGTCCAAAACATAGCTCTCACAACAAAACAAAACACACAAATTCATTTAAATTGAAAACAGCATCTTTTTCTGCCATAGCCTAAATAAATCTTAAACATTAAAAATGCTTTTTCATCAGCTGTGATTACAAATATAGCCTATGAACAGCCTAATAATAAACTATGCTTATTAGGAAATGATAAAAAGCTGCTTATTTTTAAATTTTTAACTCCCCAAACACTGTTCAATCATTTATGCGAATCTGTTAATAAAAAATATTAAACATTATCTGATTATTTAACTGCATTTTGCAACTCAAAGATCGTCTTTTCAACTGCAGGGAGCACTATAAACCAAGAAAGATCCCATCTTCTGCCAGAAAAGGCAAACATGTTGAGTTTTCTCCAGAAGAATGGTAAAAAACCTGAAAATCATTTTCCTTCAACCCATTATACAGGGGGAAAAAAATATTTAATTGTTTTACAATTATCGTTTTTGTTTTTCATTAAAAATGTAATAATAAAATAAAGTGTTGTTTTTCATAAAAGGAAAAACAGCACAAAAAAGTAATGATAAGAGAACCCTTAAAATACTGAACCGATAAGTGGTATTGATAAAAGTAGTAATACCATTAAAACCTTAACGATACTCATCCCTTATTACAAGTGAATGTATGATGCTACGATAGTGGAAGAAATGACAATCTCAACTTTCGTTTCATGATGGCTTTAAGGGATTAAACTATTATTGTGACAAAAAGACAAAGAATGGGTAAAAATGCTAAATTGTTATTCAAAAACTGCATAAATGAAATAAAATGGCATTTTGGAAACTAAATAAAAATGAATAATAAAGTGAAAATGAAATCGCAATCTAATAAAATAAGGCAGTATTACATGTTTATTGCTGTAATGTTTTTATAAACCCATTTCGTCTTCAACCCTCTGAAAACAAATATAATCTTTCATAATTGTTTCATTCTCAAGTGAATTAAGGTCATTTCTGTTTTAGAAAAGAAGGTTGACGATCACGCAAAAGTTAGTTTTTATGTTCCACTGCCCTGCTTTCAAATGTAAACATGCACTGGACGATTTTAAGTGATGATTTTTACTATTGGTAAAAAACAAAACACATTTAATAATAATCGATGCTTAGATTACATGCAAATTCAAAAAAAGTATATTTAAAAAAAAAGTCTCTCTTCCCTTCATCTTGTGTTTTTAAATATTAAAAAACGATTCTGTGAGCGGCCTCAAAACAAACAAAAATGACAAATTTCTTCATCTTATGATGCGGATTGCATCACTTGCTCTAGATTATTCATGGGATGTTTTTCACCTCACATGTATTTTCCACTTGAGTTTAATTTTTAAGCTTACAATTTAGGTAAATTCTCCACATTTGTGTCAAATGCGTCACGCATTCTGCATCTTTCCTGTCATTTATTTACTTGTGTGTTTGCATATTTGTGTTATGTACTCATGTTATCTACTTCAATTCATATTTGGTGTTACCAAGCAAAGACATTTTATATTGACAGGCACAGAGTTAAACTGAATACAAAGGTAAATTCTGGTAGCTTTCTTCACGGAAGGGATGGGATATGGGGTGGAACTAAAGAAAACACAAGGACAAAAATTTTAATGACAATTTGATTTGTAGAACTGGAAGAAATCGGCCCCAGTTCGAGGCTGTAATGGAATCATTTTTAGGACAAGCAACAGCACATTTTGGGACCCTCCGGTAAACATTTCCTTTCAGTTCTGATCCAATCTGACGCAAAATAAACTGCAGCTACAAGGAAGACACGGACACACAAAGGGATGCTGATGATCTTCAAGGAATGCTGATTAGGGATACATAGCATTTTATTGATGATCATATCAATAACGATTTCCAGTTTCTTTATGCGGCCTAGATATAAATTATTTACTGATCCTATCATTATTATTACCATTTATCAAACATATCACCTCTTTTTAAATTCTATGAAGAATCTGTAGCTAAAATTAAAGGTAAGGTAATCATACAAGGTAAGTTTGAGTAATTCCTATGAAGTTATAGAAAAAAAACATGGTGTATGTTTGATGAAAGCAAAATAATTGAAAAATGGCTCACGAAATATCGAATAGTAGGCTTAGATATCAAGGAAAACCTAGATCCAAAAAGAAAACCCTCCCACAATGGTGTTTAACTTGTCTGTGGTGTTTATTATGGTGACCGATGTTTGTTGGTTTCTTCTCAG
Seq C2 exon
GGAGATAGAGAACAGGATTGAAGCTGATCATCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000041864:ENSDART00000148667:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.173 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=FE(44.5=100)
A:
NA
C2:
PF0106717=Calpain_III=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]