DreINT0047187 @ danRer10
Intron Retention
Gene
ENSDARG00000010280 | clasp1a
Description
cytoplasmic linker associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-081104-520]
Coordinates
chr9:38460250-38463487:+
Coord C1 exon
chr9:38460250-38460393
Coord A exon
chr9:38460394-38463340
Coord C2 exon
chr9:38463341-38463487
Length
2947 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
GGGTGTGCTGTGTTGTGCAGGCC
3' ss Score
7.07
Exon sequences
Seq C1 exon
GTGAAGGTGGCCATTCTGAAATACATCGAGTCTCTGGCACGGCAGATGGACCCTGGAGACTTTGTGAATTCAAGTGAGACAAGATTAGCCGTGTCTCGCATTATCACCTGGACCACAGAACCCAAGAGCTCGGATGTCAGAAAA
Seq A exon
GTGAGTTTCATTTGATATGTGCCTACATTAATAAGAGAAGTAATGGCGCTCAGATTACAAGAAAACACGAATTGAGCTTCCTTTTTCTAGGTTAATTCTGGCAAATGCATCCTTTTCAATTCTGTAATCTTTTTCAAATTCACCTTGAAGTTAATGCAGCGAGTTTAATGTAAACATGAAATCATTTAAAGCTGGTGCAGCTCATCTTTTGATTGCAGGGGAAAACAAATATTTTGGATTTGACTAAACAATGACAATATTCCAGGTTTGGACATGAGGGTGAATAAATTGGTAATGCTTTACAATATGGGTCACATGTTTTTTGTTGTTGTTGTTTTTTCTTCTTTTTTTTTTTGGAAATAGTTTTTTTATTGAGAAAACAAAAATGTGACAATATAATACACTGCAATCATATTTACATCTTTTTTTGTTTTTATTTTAAAAGAAAAACAACAGCAACAACTAAAAACAATGCAAAACAAGAAAGAGAAGATAAAGAAAAAAAGGGACAGATTGATTTAATTGGTAACAGGTTTTTCCATATAATAAAACATTAGCAAGAAATTGTTATGCCATAGAAGGCATGCACCAGATCATTGTTTGACAAGATAGGGATATATTTAAATAAATCTCTGGAAATGGCAGAATTTGTAGATGGGGAAATGTATTTAGTCTTTTTGCCCTTCCATTTAATGGATTGCTGAAACCTGAATTTGGAATAAAGTATGTAAAGGGTGTCCAAATGTTCTCAAATGCAGCATGTTTGCCTTTTGACATATATGTAATTTTAATGCATTTACTAACTTGAACCAACAAAGAACAATACATTTATTACAGTAATTTTTAATCTGTAAGAATAAAAACAAAAATACGGTTGTTGATTGTTAGTTCATGTTCACTCAGTGCATTAATATAAATAAGCACTGCGTTGGAGTTTAATAATGCATTAGTAAATGTACATAAACTTTGATTTATAAATGCTGTCGTTCATTCTTTGATCAAGTAAGTACATAAATGAACTGTCCTGTATTGTAAAGTGTGACCAATACATTGGCAAATTTTTATTTTGAGTAAACAATGCCTTTACAATCATATATATAAAACCAATTACAGGGTTGTTACTTTTATAAATGTACATTACACATGAATTCACCCCTGCAGGATGTTTCTTCCCAACATCAATTGCTGTAAAAAGGCAACAGTCATCAGTTTTTTTATTTTGTTGTCTGTTACTTTGTTGCCCTGTCTTGATGGCCCAGACACTTCATAACTGGGCATGTGAGGAGTTGTCAGGCAGGCCCAGCACTACAGCTCTACTCCCCGGAGAGGGTCAACTGGAGGAGAGGTGTAAGCAGGTAGTGCCACTTCAGCGGCCTAACCAACCGACAACCAGCCAGCACGTAACCGCTGCACCTAACCGTGTGCCCTCTCCTCACTCTAATCTGCCTTGTTGCCTTGCGAAGTGACTGCTGAAAACAATCTCTTAACATACAATTCTTCCAAATGCTAAAGAAAGAAGAGATTTTTTAAATATTACATTAATAAATAAGTGTGTAAGAAAGTTTTCTTTCATATCTTAGTCGCTGTTAACGCTCCACTGCTTAAGTATTTTTTTTTTCACAGAATAACAGCGAGTGAATCAGTGTTCTTGCATGTTTAACATTAAACATAATTGAATAATGGACATTTGAGCTCTAAACTAAGTTAAATATACAAGTTATATAATCCAGGGTTGGGAATCTGAATCGTTTTGGCAGTTAAATTTTGCGTGTTTATTATTATTATTATTTTTATTATTATTATTATTTTTAAATTATTATTTCATCAGAGCAAAATAAAAAGAGGTCTTGAGTAGCAGATTTTTTTTTAATACATTGATCTTTTGACATATTAGCGATCATTGTTCAATAAAAGCATTCAGTATGGTTTTGAAATAAGCCTAAAAACTGCATGTTAAAGCCAAAATGACAAAAAGTGTTGTGAAGTTAATACATAATAGTCTGTCTATATAGTAGTTTAAATACAAGAGGAAAGTAATGATCTACAAAGAAACTAAACAAGCCATTGTGCAGTGCAAAGTCATGGAAAAACTCCACCAGCATTCTTCACTAATCTCCTGCCCTCCTGAATTGCTGGAATATAACACATTTGAAATATTATCCTGTCTTTAATCTCTTTTTTTCATCCATTTCAAGCTGCTTTTACACAATCTATATTGTAAAAATAGCTATGTAAATAAAAATGAATTGAATTGAATTTGAAAACAAAGCATTTGCATTGCCTTCCTTCTGATCCCAAAATGAAGAGTGGATGAGCTTCATTTTTAATAAAATTATGGACCCCACTTAATTTTCAGTTAATTGAATACTTGAATTGCCTTTTTAATTGGTGTTTGAATGAGGGGGTTAAAAAGGACAGAAAAAAGTCTTTTACTTCAAATTTATAATGATAACAAGCATTGATAACATTGTAAGTGTAACTCAAGGACAAAAAGGGAGTTGAGTTGGGCCTTGTATACAAAATTCCTTGTTATTAACATTTCATGTACATTTATATACTATTACAGTTTATTTATCATATCTTGATCTGAACTTAGCATCCTTGCAGCATGCTACTAAAATTCTAAATGCAGTAAAAATTCATGTTTTCTTTGCTAAAAATATTATCCAGAATTTCAAAAGAGCGTATTCCCATCCCTGATCCCTACACACTGGAGAAAGCCATGACAGAGCTTTTGACTGATGTCTAAGACTCTAGTATGTGGGTGCAATATCAGGTCCACTCATCTTCAGTTTAGGAGCTCTGCAGTCACAGTTATCTTATACCGTCTCTTCTTCTATCCTGAGTTATCACCGCCGGCATTTCTCGGCATGTATGAGTGCTCTCCTGTTCATTGTGGTGTTAGCATTATTGCTGGATCTCACGAGGGGTGTGCTGTGTTGTGCAG
Seq C2 exon
GCCGCCCAGGTGGTGCTGATCTCGCTCTTTGAGCTGAACACTCCTGAGTTCACCATGCTGCTCGGCGCTCTGCCGAAAACATTCCAGGATGGAGCCACCAAACTCCTGCATAATCATCTCAAGAACTCTAGCAACACCAGCAACGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010280:ENSDART00000137955:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.045 A=NA C2=0.394
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(20.2=100)
A:
NA
C2:
PF123483=CLASP_N=PD(18.5=87.8)
Main Inclusion Isoform:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]