MmuINT0036720 @ mm10
Intron Retention
Gene
ENSMUSG00000064302 | Clasp1
Description
CLIP associating protein 1 [Source:MGI Symbol;Acc:MGI:1923957]
Coordinates
chr1:118552013-118560129:+
Coord C1 exon
chr1:118552013-118552156
Coord A exon
chr1:118552157-118559985
Coord C2 exon
chr1:118559986-118560129
Length
7829 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
GCCATGCCTTCCTTTTCTAGGCA
3' ss Score
11.41
Exon sequences
Seq C1 exon
GTCAAAGTAGCAATCCTGAAATACATCGAATCTCTAGCCAGACAGATGGACCCCACAGATTTTGTAAATTCCAGCGAAACAAGACTAGCTGTTTCTAGGATCATAACATGGACTACAGAACCAAAGAGTTCAGACGTGAGAAAG
Seq A exon
GTATGTTCACAGAGCTGAAGCAAGACTCCAGGCTTTCCTTAGCTAGGCATACACATCCCCTGGAAGAGTGTGTTCTGCCCCACACACCCACCTAGCTGTGTCACCACGGCTGTGCTGGTAGTGCTTCTCCATCCTGCTCTGCCCATCTGTAGTCTGATGGAGCAACCTGTGTAATAAATAGCAAAGCATTAGTAGTTGTGAGTTTGCTGGCACTGTGCTCTGATGAGGGATGGGCAGATCTGGGGCTCACTGTGGCTGCAAAGGTGCCTGGGAGTGAAACGTAGTTTTAACCTAGCCCTGTGTTCAATATGTGGCTGAGGATGCCCTTCAACTACTTTTTAACAAAAGGATTTAAAATTTTTTATGTGCTTGGGTGTTTTGCCTGCATTTATGTCTGTGTAGCATGTTTGTGCCTAGTGCCTACCAAGGTCAGAAAAGAGAATCAGATGCCCTAAAACTGGAGTTCTGGAGGATGTGAGCCACCATGTAAATGCTGGCAACCAAGTGGTGAACCTCTTGTAAGAGGAACAGGTGGCTGGGTGTGGTGGCGCACACCCTTGATCCTAGCACTCAGGAGGCAGAGGCAGGAGGATTTCTGAGTTCGAGGTCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTGGGGGGGTGGGGGGGGGGGGACGGACACGGGACAAGTGTTCTTAATCACTGAGCCATCTCAGTAGCCCCTTTATTATTTTTGACTTGTGTTTGTTTGTTATGTGGGCATGAGCATGTCTGAGTATAGGGACCCTGGGAGATCAGAAAAAGCCCTCATCCTGGAGTTGGAATTCCAGTTTAAGCCTCTGCTTGGGTTCTCTGCCAGAACACTATGTACTCTTAATTCTTAATACCCCTGCCCCATCCCTATGACCTTGAACTTTGGTCCTCCAGCCTTTACTTTCCCAGTGCTGAGATTGCAGGCCTGTGCTACTGCATACAGCTTATGTACTTCTGGGGATCACATCTGGCTTATGTTACTTTGGTGATCAAGCCTAGGGCCACATTCGTGCTGAGCAAGCAGCTTATCAGCTGAGCCCTACTGATGGCCCCTTTGAAGCATTTTAAACCAAATAGGCTGATAGAGTTCACACTCATTAACTTCCTTTTTTTTTTTTTTTGTTTTTTTTTTTTGTTTTCTGAGACAAGAGTTTTTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATTCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCGCCACCATGCCTGGCTAACTTCCAATATTTTTAATATTTCCTTTGTTTCATTTTTAGCTCCATTTTTCAGGGATGTTTCACTCTGCAAGGAGAAGGGAGTTTTAGTATTTAAGGTATTTTTTCAAAACGAAAAGCAAACTCACAGCATTCAAAGGGTATTGCCTAACAGACTGTGGCTGCTGGAAGCCTCCCAGAGATACCCAACTATTACCTGGCGTGGCTACTTCAACATTAACCTTTTCCTTGTGTAAGTGTGCCAGCTAGATGTCAGTGGTCACTAGACCTTTTCCAGGGCACTGTATTGGTGGAAAGTGATGGAGAATGTTACCTGGAAACAAGTTTGCTGCTTGGCCTCCTTTTGGCTTCTGCCTGTGCAGCTGAGCAAGGCATTTAATCTCATGAGTTTCTTGTCTTTGAGAGGCTGATAATACTTAGCTGGGGCATCGAGAGCAGCCTTGATTTCAGTAAGAAAAAGATCCTCTTACATCTTTTGCTGTTGTCTAAGGGTTGTTTGGGATTTGTTGCTGTTGAGAAACAAGTTGAGAATCAAGCTCTTTCCAGTACTTAGGAAGTTATATTATATATGAAAGACCATCTAATAAAGGCAATAGAATTTTTCCCGTTAAATTTGTTTGATTCCTCCGGGCAGTGGTGGCGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGAATTTCTGAGTTGAGGCCAGCCTGGTTTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTATCTCGAAAAAACAAAAAACAAAAAAACCAAAAAATTGTTTGTTTCTGTCTTGTGTGTGAGTATGTGCATGTGAGATGCTAGAACTCAGACCCAGGGCCTTGGAAGGCTGGCAGGCTCTCTACTCCTGTGCTGTATCTCCAGCCCTTAGCTTTTTGAGACAGAGCTTGATGAAGTTCAAGCTTAGCACTTTGAATCTCCTGCCTCCTTTTCCCAGTTCTGGGTTACAGTGTGAACCCCTAAGTCCAGCCATAGTATTTAATTGCATGTTCCTCCTTAACAATTCTCGATGCTGTATGTCTGCTTATCTTGTGTGATTGTCTCTGTCAAATGTCAAAGCCGGTGTCACTTTTCAGTGGGCCAGGGGCCAGGGACCTTTCACAAGTGCCTGCTGATTCCTTGGCTTCCTCAGGTTTTGAGAAATGTGAGCAATGGAGGTGTGGCAAAGAAACCTAGGAAGAATAGACACGTGTGCGACGCATCCAGAAAAGTATGCAGATCTCTGAAGGGTGACATTTCTAAATGACTTAAGAGCAAGATGGCCCAGCGGGTAAACGCTCTTGCCACCAAGCCTAATGAACTGGGTTTGATTCATGAAACCCATGTGGTAGAAGAAGAAAAATGTCTCTTACAAGTTGTTCCTGGTCCCCACATAATGTTGTAGTACATGTGCACCTCACCACACACATACACACACAAGTGTTAATGTAAAATATGTGTGTGTTTGTGCATGTATGTATGTATGTATGTATGTGTGGGGAGCAAGCCTAATCTAAAACCTAAGAGTTGACTGTGAACTTAACCATGACTGCTTCTCATGTCTCACTTCGGCCTCTGATTGCCCTTCATATCACAGGAAGCAAGACTTCTCCTCCTCCCACGAAGGACTGTGATTAACTAAGACACCCAGCAAAGGTCAGGGTACTGAGGTCTCACTGTCCCTGACTTCTGGCTCAGGGGCCTCAGCCTTGATGAAGCTTCACTTTGAGCCAGCAGACAACCTCCACTGACTGTTTCCTCTTTCTAATGCACCCTCCCCTCTTCTGCTCACCAGTCCCAGCGTCAGCGTAGTCGAGCAGGGGAGGATGTCCCTGGTAGGTCAGTTCCCACCTGCTCTGGGCCTGGAGAAGGAAGCTTGGAAGAAAGTTGTAAACAGGTAGATGGAGCCCATATACTAACCCCAAGCACACTCTCTGTCCACCTTCACATTGTCCGTACCAGTTGCCCCCTGTGAGGCCACTGAGAATTACCATTAATATGATGGCATGTGACTCTGTGTGCCTGGTTTGATGTTGGTTCCTGATTAACTACCTTCCCAGTGAATGGTTTCTAAGTGTTGCTCACTACCAAATCAAATAGAACAGCAAGGGGAGTATTGTAAATATCCAGGACTCAGGCAGACACCTTTCCCCAAGTTGGGGCCCAGTGCCCATGGATCAAGGTGCTGCTGCCATGCAGAGGAAGGGGGGACAAGAAGATCCCTGGGGATGCTGAGCCAGCTAGCCCAGTCTGCTTGGCAAGCTCCAATCCACTGAGTGATGGTGGGCAGCACCTGAGAAACAACCTGGAGGTTGTCCTCTGGCCTTCATGTGAACCCACACATACACACACACATAATTTTTTTTTCAAAGTACCTTGTCTTCAATGGTTTTGTAAAGGAAGTTTACTCTTCTCAGTAAATTAGAAACTTTGTGTCCTTCTGTTTTCCCACATCAGAAGTTTTTACAACTGAGTAGTATCAACACTGAAACATATATTAAAGTTTAATTTATGTCCTGCCTGCTTGGAAGAAGTCCTTTCTTTTGTAAAGTGTACAGCTGCCAGGCAGATGATGATCCTAGGAGTTCTCAGCAGACAGTGAGTTTTGAAGAACCTTTTACCTACTCCTGAATTCTACTAGAAAGGAACAAGCGAGAATCACTGGGGCTGAAGAGATAACTCAGAGGTTAAGAGCACTGACTGTTCTTCCAGTGGTCCTGAGTTCAATTCCCAGAAACCACATGGTGGCTCCCAACCATCTATAATGGGATCCAATGCCCTTTTCTGGTGTGTCTGACAGCTACAGTGTACTCATATATAAATAAAATAAATTTAAAAAAGAAAATTGAGAATCACTCTTAAGATTCCATTTGACCCTGAAATTACCAGGCCATAACAAATTCTAAATTGTCCACTAGAAAAAGCTAGCAAGGGGCTATGAAGATGCTTCAGTGGGCAAAGTGCTTGTATAATTGTGAGGGAGGGCCTGAGTTCAGATCCCCAGGACCCATGTGAAGAAGCATGGCAGAACATGCTTAAGATGCCAGAGGAGCGGAGGCAAGCAGGTCCCCAGAACTCACTGGCCAGCCAGCCTAATCAAATCAGAAATGCATGCCACACACACACACACACACACACACACACACACACACACACACACACACGTTAGTAACACTTGGAAAATTTTACCAGGCTACCTCAGCGGTTCTGGCAGTGGTAGAGGCTGTGCAGGGGCATGTGTGAGAATGTTGTGTGTCTTTTCCACTTTCTGAACTAGTAAGCATGAATTATACCCCGGGTTTTTTACAAATGCTCTTTAAGTAGTTTAGTATTGGAAAGTGACCTTTTTGTTTGTTTTTGAGACGGAATATTGCTATCTAACTTGGCTGCTAGCCTTGAACTTATAGAGCTCCTCCTGCTTCTGTCTCCCAAGTGCTGGGTAGAATTATCCTCCAGTGTAATCATCTTGATAGTAATGGCAGATATAATCTCCCTTTCTCGCTTGCTTGGATTCCGGTATTTTCAGTTCTCACTAAATCACAGAGTTTAGGGACATAGCAGTCTCATTGTCAAAGTTTGATTTGAAATCTTTTTAAAAGCATAGTCTCAAATTATATTTTTAATTTCTGAAGTTTTGATCTTAGAAAAGACTGTACTTGGTAACCACCTTTAAGCCAAAGCTTGACTTTTGAGGACTGAAAAGGTGGTTCACAGCTGCCTGTACCTCCAGCTCCAGGAGATACAAACGCCTTCTTCTGACTTCTGCAGACATATGCATATATGCTCATGTGTGTACATACACATAATCACACACCCATACACAGGAGAAAAGGAATAAAAATAAATATTTTTAAAGTAAAGGGGGCTGGAGAAATGACTCAGCAGTTAAGAGCACTTACCTGCTCTTGCAGACCCCAGTGCCCACATTAGGTGGATCACAACCACCTGTAATTCCTACCCCACAGGATCTGACACCCTCTTCTGGCCTCTGTAGGTGCACATGCATGCACACAGCATATGCATACACACATTCACACACTCATTAAATACATGTGTGTTTTAAATTTAGCATTGGGATTATTTGAAAAGCCTACCAAGTTAGAAGTTAAAGGTCTTACTGTGTGCTTTCTTTCCTGAGATAAAAGTAAACCTTCATAAATAGCCAAGAATTTGCACATCGTCTAGGGCTACAAGGCTACTGTTCTTAAAAGATGCTGTTTTTTATTAGTATCATGAAAATTTTCAAGTTATTTTGAGGCATTACATGTGCATTATTCTGGGAGGAAATATGGTCTCTTAAAGACACTGGCACATTTCACAATGAAGATAGACTGTTCCAGAATGCAGTAAGTAGAGTACTTGCCCAGCATGCCCTTGTTCTGTCCACAGCTCCTCGTACTATGGCATGGTAGTGTACAGCTGTCATCCTGGTACTCCAGGGGTGGAGTCAGGAAAACCAGAGGTTCACAGTCATCACATATAGCAAGTTCAGTACCAAGCCGAGGCTCTGTCTGCAAGATGAAGAGACAGTTTTCAGGGGCCTCTATGCACATGCAAAGCCCAAGTCTCTGTGCATCCTTACTGCAGTGATGGCACACTTGTGTTTTCGTGTGCTGAAATTCTCCTGTCTGCCTTCTCCTCACGGTGTGATTTTCCTGCATGTGTGTGGAGTTTCCCTAACGTCTCATGAACTGTTTCTAACAGTACAGACTTATTTGCACACTGTTTGAGGTTGGTTTTGTTCCACAAATCACCTGACAGTACCTTCATTTGTTTGAAACAGATTGTTTCATATGGTGCTTAAATCAGGAAAGTATGTTTTATCATAGTACGTCATCAGTAATGATGTTTCTCGGGTGTGGTTAAGAGTATGCCAGCCACCTGGGGTCTTGGGTAGTGAGGCTGAGAGAAAGTCTGGTAACAGTCTGTGATGATCAGGAGAGGAAATGGTGTCTGGTGCATTTAGAAAGATGAAAAAAGAATTTTTTATTCCACAAAGAATATTCTTAGTTTTTAATTTGACCCTATATCATGGAAAGTATTCCAAAGACTTTACTGTAATCCTAAATATTATAGTCTTTGAAAAGATGTCTTACAGTATAGTCAGTTAAAATAAAAATGAAATAGAAACTAGAAATAGTTTTGCATAATTTTTTTTCTTTCTCTTGACTCGTAGAAATTAACAAGAAATGGCAATTGGTATTTACCAGAAGCATCTTTCAGTTTAGTTTGAGGGTTTTTTGTTTTTGTTTTTTCTTTGTTGTTGTTTAAGACAGATTCTCTCTCTCTGCTCACTTGACCTGCCTGGACCACATTGTATAGACCAGGTTGCGAGCACTCGGAAATTGGCCTCTCTGCCTCTGCCTCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTGCCTCTCTGCCTCTGCCTCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTCTGCCTCTGCCTCTCTGCCTCTGCCTCTCTGCCTCTGCCTCTCTGCCTCTGCCTCTGCCTCTGCCTCTCTGCCTCTGCCTCTCTGCCTCTGCCTCTGCCTCTCTGCCTCTGCCTCTCTGCCTCTGCCTCTGCCTCTGCCTCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTCTGCCTCTGCCTCTCTGCCTCTGCCTCTGCCTCTCTGCCTCTGCCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTGCCTCTGCCTCTGCGCTGAGATAAAAGGCAGGCACCACCACACCCAGCTTCAGTGTTTCTAAGTCAGCCTCCTCACTGATTCCTGAGTCTTTGGTCTTTAAGCTCAGACTCTTCATGGCTAAGCCACAGCCTTAGGAGCACAGTGCTTGAGGGAAAGTTCCTGTCTCTTGTTTTAGATTGCTTTCCCATGGCCACCATCACTGCAAGTGCCCCTGCGTTCACTCAGTTAATAAAATTGTTTCCCAAAGGAAACAGAGTGCACTTTTGTCTATCTCAGTATCCAGTTTGTTCCCCCTAAGTCTTTGTTCTGCTTCTTAGGCATAAAAGAAGACGTTTTTCATGTGTATTTAAAATTTCTAATTTAGCCAACTGCAGTGGGGTAGAATGTCCCAAGATAAACCCAACAGTAGTTTGTCTAGAAACTTCCTCTTCCCAGGGTGCACTGCCAGCTTGCCCACTTCTCACTAGAGTGAGAACAATCTTAAACATTTAATATTTTTATTATTATATAATGTGATATTATTAATATTCTCCCACTTCCCAGCTTCCTTCCTCCTGCTAGACAACAAAGGAAATGTGTCATCCAAGGCCAGAGCATTACAACAGAAGCAAGGACTATTCCAGATTGAAGTCAGGTTCTCTGTGCTTGTGACCTCTCTGGTGGCGTGGTGCACACTTGTCACTTAGCCATGCCTTCCTTTTCTAG
Seq C2 exon
GCAGCACAAATTGTGCTCATCTCTCTGTTTGAACTGAACACGCCTGAATTTACCATGTTACTTGGTGCCTTGCCAAAAACATTCCAGGATGGTGCCACCAAACTCCTGCATAACCACCTCAAGAACTCCAGTAACACCGGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064302:ENSMUST00000190571:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.218
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(20.4=100)
A:
NA
C2:
PF123483=CLASP_N=PD(17.4=83.3)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types