MmuINT0036720 @ mm9
Intron Retention
Gene
ENSMUSG00000064302 | Clasp1
Description
CLIP associating protein 1 [Source:MGI Symbol;Acc:MGI:1923957]
Coordinates
chr1:120448590-120456706:+
Coord C1 exon
chr1:120448590-120448733
Coord A exon
chr1:120448734-120456562
Coord C2 exon
chr1:120456563-120456706
Length
7829 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
GCCATGCCTTCCTTTTCTAGGCA
3' ss Score
11.41
Exon sequences
Seq C1 exon
GTCAAAGTAGCAATCCTGAAATACATCGAATCTCTAGCCAGACAGATGGACCCCACAGATTTTGTAAATTCCAGCGAAACAAGACTAGCTGTTTCTAGGATCATAACATGGACTACAGAACCAAAGAGTTCAGACGTGAGAAAG
Seq A exon
GTATGTTCACAGAGCTGAAGCAAGACTCCAGGCTTTCCTTAGCTAGGCATACACATCCCCTGGAAGAGTGTGTTCTGCCCCACACACCCACCTAGCTGTGTCACCACGGCTGTGCTGGTAGTGCTTCTCCATCCTGCTCTGCCCATCTGTAGTCTGATGGAGCAACCTGTGTAATAAATAGCAAAGCATTAGTAGTTGTGAGTTTGCTGGCACTGTGCTCTGATGAGGGATGGGCAGATCTGGGGCTCACTGTGGCTGCAAAGGTGCCTGGGAGTGAAACGTAGTTTTAACCTAGCCCTGTGTTCAATATGTGGCTGAGGATGCCCTTCAACTACTTTTTAACAAAAGGATTTAAAATTTTTTATGTGCTTGGGTGTTTTGCCTGCATTTATGTCTGTGTAGCATGTTTGTGCCTAGTGCCTACCAAGGTCAGAAAAGAGAATCAGATGCCCTAAAACTGGAGTTCTGGAGGATGTGAGCCACCATGTAAATGCTGGCAACCAAGTGGTGAACCTCTTGTAAGAGGAACAGGTGGCTGGGTGTGGTGGCGCACACCCTTGATCCTAGCACTCAGGAGGCAGAGGCAGGAGGATTTCTGAGTTCGAGGTCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTGGGGGGGTGGGGGGGGGGGGACGGACACGGGACAAGTGTTCTTAATCACTGAGCCATCTCAGTAGCCCCTTTATTATTTTTGACTTGTGTTTGTTTGTTATGTGGGCATGAGCATGTCTGAGTATAGGGACCCTGGGAGATCAGAAAAAGCCCTCATCCTGGAGTTGGAATTCCAGTTTAAGCCTCTGCTTGGGTTCTCTGCCAGAACACTATGTACTCTTAATTCTTAATACCCCTGCCCCATCCCTATGACCTTGAACTTTGGTCCTCCAGCCTTTACTTTCCCAGTGCTGAGATTGCAGGCCTGTGCTACTGCATACAGCTTATGTACTTCTGGGGATCACATCTGGCTTATGTTACTTTGGTGATCAAGCCTAGGGCCACATTCGTGCTGAGCAAGCAGCTTATCAGCTGAGCCCTACTGATGGCCCCTTTGAAGCATTTTAAACCAAATAGGCTGATAGAGTTCACACTCATTAACTTCCTTTTTTTTTTTTTTTGTTTTTTTTTTTTGTTTTCTGAGACAAGAGTTTTTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATTCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCGCCACCATGCCTGGCTAACTTCCAATATTTTTAATATTTCCTTTGTTTCATTTTTAGCTCCATTTTTCAGGGATGTTTCACTCTGCAAGGAGAAGGGAGTTTTAGTATTTAAGGTATTTTTTCAAAACGAAAAGCAAACTCACAGCATTCAAAGGGTATTGCCTAACAGACTGTGGCTGCTGGAAGCCTCCCAGAGATACCCAACTATTACCTGGCGTGGCTACTTCAACATTAACCTTTTCCTTGTGTAAGTGTGCCAGCTAGATGTCAGTGGTCACTAGACCTTTTCCAGGGCACTGTATTGGTGGAAAGTGATGGAGAATGTTACCTGGAAACAAGTTTGCTGCTTGGCCTCCTTTTGGCTTCTGCCTGTGCAGCTGAGCAAGGCATTTAATCTCATGAGTTTCTTGTCTTTGAGAGGCTGATAATACTTAGCTGGGGCATCGAGAGCAGCCTTGATTTCAGTAAGAAAAAGATCCTCTTACATCTTTTGCTGTTGTCTAAGGGTTGTTTGGGATTTGTTGCTGTTGAGAAACAAGTTGAGAATCAAGCTCTTTCCAGTACTTAGGAAGTTATATTATATATGAAAGACCATCTAATAAAGGCAATAGAATTTTTCCCGTTAAATTTGTTTGATTCCTCCGGGCAGTGGTGGCGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGAATTTCTGAGTTGAGGCCAGCCTGGTTTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTATCTCGAAAAAACAAAAAACAAAAAAACCAAAAAATTGTTTGTTTCTGTCTTGTGTGTGAGTATGTGCATGTGAGATGCTAGAACTCAGACCCAGGGCCTTGGAAGGCTGGCAGGCTCTCTACTCCTGTGCTGTATCTCCAGCCCTTAGCTTTTTGAGACAGAGCTTGATGAAGTTCAAGCTTAGCACTTTGAATCTCCTGCCTCCTTTTCCCAGTTCTGGGTTACAGTGTGAACCCCTAAGTCCAGCCATAGTATTTAATTGCATGTTCCTCCTTAACAATTCTCGATGCTGTATGTCTGCTTATCTTGTGTGATTGTCTCTGTCAAATGTCAAAGCCGGTGTCACTTTTCAGTGGGCCAGGGGCCAGGGACCTTTCACAAGTGCCTGCTGATTCCTTGGCTTCCTCAGGTTTTGAGAAATGTGAGCAATGGAGGTGTGGCAAAGAAACCTAGGAAGAATAGACACGTGTGCGACGCATCCAGAAAAGTATGCAGATCTCTGAAGGGTGACATTTCTAAATGACTTAAGAGCAAGATGGCCCAGCGGGTAAACGCTCTTGCCACCAAGCCTAATGAACTGGGTTTGATTCATGAAACCCATGTGGTAGAAGAAGAAAAATGTCTCTTACAAGTTGTTCCTGGTCCCCACATAATGTTGTAGTACATGTGCACCTCACCACACACATACACACACAAGTGTTAATGTAAAATATGTGTGTGTTTGTGCATGTATGTATGTATGTATGTATGTGTGGGGAGCAAGCCTAATCTAAAACCTAAGAGTTGACTGTGAACTTAACCATGACTGCTTCTCATGTCTCACTTCGGCCTCTGATTGCCCTTCATATCACAGGAAGCAAGACTTCTCCTCCTCCCACGAAGGACTGTGATTAACTAAGACACCCAGCAAAGGTCAGGGTACTGAGGTCTCACTGTCCCTGACTTCTGGCTCAGGGGCCTCAGCCTTGATGAAGCTTCACTTTGAGCCAGCAGACAACCTCCACTGACTGTTTCCTCTTTCTAATGCACCCTCCCCTCTTCTGCTCACCAGTCCCAGCGTCAGCGTAGTCGAGCAGGGGAGGATGTCCCTGGTAGGTCAGTTCCCACCTGCTCTGGGCCTGGAGAAGGAAGCTTGGAAGAAAGTTGTAAACAGGTAGATGGAGCCCATATACTAACCCCAAGCACACTCTCTGTCCACCTTCACATTGTCCGTACCAGTTGCCCCCTGTGAGGCCACTGAGAATTACCATTAATATGATGGCATGTGACTCTGTGTGCCTGGTTTGATGTTGGTTCCTGATTAACTACCTTCCCAGTGAATGGTTTCTAAGTGTTGCTCACTACCAAATCAAATAGAACAGCAAGGGGAGTATTGTAAATATCCAGGACTCAGGCAGACACCTTTCCCCAAGTTGGGGCCCAGTGCCCATGGATCAAGGTGCTGCTGCCATGCAGAGGAAGGGGGGACAAGAAGATCCCTGGGGATGCTGAGCCAGCTAGCCCAGTCTGCTTGGCAAGCTCCAATCCACTGAGTGATGGTGGGCAGCACCTGAGAAACAACCTGGAGGTTGTCCTCTGGCCTTCATGTGAACCCACACATACACACACACATAATTTTTTTTTCAAAGTACCTTGTCTTCAATGGTTTTGTAAAGGAAGTTTACTCTTCTCAGTAAATTAGAAACTTTGTGTCCTTCTGTTTTCCCACATCAGAAGTTTTTACAACTGAGTAGTATCAACACTGAAACATATATTAAAGTTTAATTTATGTCCTGCCTGCTTGGAAGAAGTCCTTTCTTTTGTAAAGTGTACAGCTGCCAGGCAGATGATGATCCTAGGAGTTCTCAGCAGACAGTGAGTTTTGAAGAACCTTTTACCTACTCCTGAATTCTACTAGAAAGGAACAAGCGAGAATCACTGGGGCTGAAGAGATAACTCAGAGGTTAAGAGCACTGACTGTTCTTCCAGTGGTCCTGAGTTCAATTCCCAGAAACCACATGGTGGCTCCCAACCATCTATAATGGGATCCAATGCCCTTTTCTGGTGTGTCTGACAGCTACAGTGTACTCATATATAAATAAAATAAATTTAAAAAAGAAAATTGAGAATCACTCTTAAGATTCCATTTGACCCTGAAATTACCAGGCCATAACAAATTCTAAATTGTCCACTAGAAAAAGCTAGCAAGGGGCTATGAAGATGCTTCAGTGGGCAAAGTGCTTGTATAATTGTGAGGGAGGGCCTGAGTTCAGATCCCCAGGACCCATGTGAAGAAGCATGGCAGAACATGCTTAAGATGCCAGAGGAGCGGAGGCAAGCAGGTCCCCAGAACTCACTGGCCAGCCAGCCTAATCAAATCAGAAATGCATGCCACACACACACACACACACACACACACACACACACACACACACACACACGTTAGTAACACTTGGAAAATTTTACCAGGCTACCTCAGCGGTTCTGGCAGTGGTAGAGGCTGTGCAGGGGCATGTGTGAGAATGTTGTGTGTCTTTTCCACTTTCTGAACTAGTAAGCATGAATTATACCCCGGGTTTTTTACAAATGCTCTTTAAGTAGTTTAGTATTGGAAAGTGACCTTTTTGTTTGTTTTTGAGACGGAATATTGCTATCTAACTTGGCTGCTAGCCTTGAACTTATAGAGCTCCTCCTGCTTCTGTCTCCCAAGTGCTGGGTAGAATTATCCTCCAGTGTAATCATCTTGATAGTAATGGCAGATATAATCTCCCTTTCTCGCTTGCTTGGATTCCGGTATTTTCAGTTCTCACTAAATCACAGAGTTTAGGGACATAGCAGTCTCATTGTCAAAGTTTGATTTGAAATCTTTTTAAAAGCATAGTCTCAAATTATATTTTTAATTTCTGAAGTTTTGATCTTAGAAAAGACTGTACTTGGTAACCACCTTTAAGCCAAAGCTTGACTTTTGAGGACTGAAAAGGTGGTTCACAGCTGCCTGTACCTCCAGCTCCAGGAGATACAAACGCCTTCTTCTGACTTCTGCAGACATATGCATATATGCTCATGTGTGTACATACACATAATCACACACCCATACACAGGAGAAAAGGAATAAAAATAAATATTTTTAAAGTAAAGGGGGCTGGAGAAATGACTCAGCAGTTAAGAGCACTTACCTGCTCTTGCAGACCCCAGTGCCCACATTAGGTGGATCACAACCACCTGTAATTCCTACCCCACAGGATCTGACACCCTCTTCTGGCCTCTGTAGGTGCACATGCATGCACACAGCATATGCATACACACATTCACACACTCATTAAATACATGTGTGTTTTAAATTTAGCATTGGGATTATTTGAAAAGCCTACCAAGTTAGAAGTTAAAGGTCTTACTGTGTGCTTTCTTTCCTGAGATAAAAGTAAACCTTCATAAATAGCCAAGAATTTGCACATCGTCTAGGGCTACAAGGCTACTGTTCTTAAAAGATGCTGTTTTTTATTAGTATCATGAAAATTTTCAAGTTATTTTGAGGCATTACATGTGCATTATTCTGGGAGGAAATATGGTCTCTTAAAGACACTGGCACATTTCACAATGAAGATAGACTGTTCCAGAATGCAGTAAGTAGAGTACTTGCCCAGCATGCCCTTGTTCTGTCCACAGCTCCTCGTACTATGGCATGGTAGTGTACAGCTGTCATCCTGGTACTCCAGGGGTGGAGTCAGGAAAACCAGAGGTTCACAGTCATCACATATAGCAAGTTCAGTACCAAGCCGAGGCTCTGTCTGCAAGATGAAGAGACAGTTTTCAGGGGCCTCTATGCACATGCAAAGCCCAAGTCTCTGTGCATCCTTACTGCAGTGATGGCACACTTGTGTTTTCGTGTGCTGAAATTCTCCTGTCTGCCTTCTCCTCACGGTGTGATTTTCCTGCATGTGTGTGGAGTTTCCCTAACGTCTCATGAACTGTTTCTAACAGTACAGACTTATTTGCACACTGTTTGAGGTTGGTTTTGTTCCACAAATCACCTGACAGTACCTTCATTTGTTTGAAACAGATTGTTTCATATGGTGCTTAAATCAGGAAAGTATGTTTTATCATAGTACGTCATCAGTAATGATGTTTCTCGGGTGTGGTTAAGAGTATGCCAGCCACCTGGGGTCTTGGGTAGTGAGGCTGAGAGAAAGTCTGGTAACAGTCTGTGATGATCAGGAGAGGAAATGGTGTCTGGTGCATTTAGAAAGATGAAAAAAGAATTTTTTATTCCACAAAGAATATTCTTAGTTTTTAATTTGACCCTATATCATGGAAAGTATTCCAAAGACTTTACTGTAATCCTAAATATTATAGTCTTTGAAAAGATGTCTTACAGTATAGTCAGTTAAAATAAAAATGAAATAGAAACTAGAAATAGTTTTGCATAATTTTTTTTCTTTCTCTTGACTCGTAGAAATTAACAAGAAATGGCAATTGGTATTTACCAGAAGCATCTTTCAGTTTAGTTTGAGGGTTTTTTGTTTTTGTTTTTTCTTTGTTGTTGTTTAAGACAGATTCTCTCTCTCTGCTCACTTGACCTGCCTGGACCACATTGTATAGACCAGGTTGCGAGCACTCGGAAATTGGCCTCTCTGCCTCTGCCTCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTGCCTCTCTGCCTCTGCCTCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTCTGCCTCTGCCTCTCTGCCTCTGCCTCTCTGCCTCTGCCTCTCTGCCTCTGCCTCTGCCTCTGCCTCTCTGCCTCTGCCTCTCTGCCTCTGCCTCTGCCTCTCTGCCTCTGCCTCTCTGCCTCTGCCTCTGCCTCTGCCTCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTCTGCCTCTGCCTCTCTGCCTCTGCCTCTGCCTCTCTGCCTCTGCCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTGCCTCTGCCTCTGCGCTGAGATAAAAGGCAGGCACCACCACACCCAGCTTCAGTGTTTCTAAGTCAGCCTCCTCACTGATTCCTGAGTCTTTGGTCTTTAAGCTCAGACTCTTCATGGCTAAGCCACAGCCTTAGGAGCACAGTGCTTGAGGGAAAGTTCCTGTCTCTTGTTTTAGATTGCTTTCCCATGGCCACCATCACTGCAAGTGCCCCTGCGTTCACTCAGTTAATAAAATTGTTTCCCAAAGGAAACAGAGTGCACTTTTGTCTATCTCAGTATCCAGTTTGTTCCCCCTAAGTCTTTGTTCTGCTTCTTAGGCATAAAAGAAGACGTTTTTCATGTGTATTTAAAATTTCTAATTTAGCCAACTGCAGTGGGGTAGAATGTCCCAAGATAAACCCAACAGTAGTTTGTCTAGAAACTTCCTCTTCCCAGGGTGCACTGCCAGCTTGCCCACTTCTCACTAGAGTGAGAACAATCTTAAACATTTAATATTTTTATTATTATATAATGTGATATTATTAATATTCTCCCACTTCCCAGCTTCCTTCCTCCTGCTAGACAACAAAGGAAATGTGTCATCCAAGGCCAGAGCATTACAACAGAAGCAAGGACTATTCCAGATTGAAGTCAGGTTCTCTGTGCTTGTGACCTCTCTGGTGGCGTGGTGCACACTTGTCACTTAGCCATGCCTTCCTTTTCTAG
Seq C2 exon
GCAGCACAAATTGTGCTCATCTCTCTGTTTGAACTGAACACGCCTGAATTTACCATGTTACTTGGTGCCTTGCCAAAAACATTCCAGGATGGTGCCACCAAACTCCTGCATAACCACCTCAAGAACTCCAGTAACACCGGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064302-Clasp1:NM_001081276:29
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.250 A=NA C2=0.368
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: