DreINT0048059 @ danRer10
Intron Retention
Gene
ENSDARG00000019924 | cmpk
Description
cytidylate kinase [Source:ZFIN;Acc:ZDB-GENE-040426-2113]
Coordinates
chr2:10265945-10269638:+
Coord C1 exon
chr2:10265945-10266237
Coord A exon
chr2:10266238-10269491
Coord C2 exon
chr2:10269492-10269638
Length
3254 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TCCTGCTGTTTTTGTCTCAGAAC
3' ss Score
9.53
Exon sequences
Seq C1 exon
GATTGGCTGGTACGTATACGGCGGAAGTGGAATCGGCCCCGGCGCACTTCCCTGACACGCATCAACCGGTCATTCAACCAGCTCCCTAGCCGACTCCCAGGGGTCGATGGTCATTCATTGAGTCAAACTATCGCTTATCAGAACGGTTTATGATTGTGGGTTTGCTTCACAGGCTGTCGGAAAAGCTTCCACGCGTTTTGCACAGGTTGAGAGTGATAATGAAGCCGCAAGTTGTGTTTGTTTTGGGCGGGCCTGGCGCGGGGAAAGGAACACAATGCGCGAGAATTGTGGAG
Seq A exon
GTAAGAGATATAGCGCATTGGTCATTTTTATATGAATAGAACAACAGTTTAAGTGTTGTATATTAGTTAATGGAAGCTTAAGATGTTCGTTTTTGGGTGATGAAATTCAAAGTCGGGGTGTTTTAAATAGAATACTCGTTCCGTATCCTCTATGACATTCAAACACACAAACCCCTGTTTCAGTATCTTTATTTCTTAACTGTTGTACTGTACGACATGATATGTCATGACGTGGCTTAATATGAAAATATTTTTGTTGGGAATTTGTCATTCTTTCGGAATGCATTTATTTATTGAGTAAGAATTTCCCGAAGTGATTCCATACTCATCGTCACATAATTTCCTGGTTATAAACAGAACCTCAGTGCAGTGTTCAGCTGCCATGATTTGGCACCAATACTGGGTAGAAGGGCTTACGTGTGAAACGAAGCTATATATATATATATATATTTATATATTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTGGGGTCAGTAGGATTTTTTAAATTTTAAGATAAGCTTATCTTGCTCCCCAAGGCTGCATTTATTTAATCGAAAATACATTACAAATTGTGAAATGTTTTTGTTTTCACAATTTTATTCATAATAAAGTTCAAACTTTTATACTGTTTAAAAGTAGTTTATAATTTATCTTAATAATTTATTCCAGTCATTTTAATGATGAATTTTCATCTTCATTACTCCAGATTTCAGAGTCACATGATTCTTCAGAAATCACACTAATATTAATTATTACTAATATTAATGATTATTTATATTATTAATGGTAATCACAATAATGACTGGAGTAATAATTTAGTTTGAAACTACATACAATATGTTTAAATTTGTAATGTATTTTTAACATTTATTTAAGGCTGCCTTAATGAACTTTCTTTAAAAAAACAAAACATGAAAAACAAAAAAATGACCCCAGACTTTTTTTTTCTTTCCCAAAAGTATTTTTATTGAACATATTAGATATGAAACATACATTACAAAATAGCTTTTCAATTTTTCTTTTTTTTTTTTACACAACAAACAAACAAAACCTGTCGCACATATATACATTTAGGTTCTAGAAAAAAATATAAATAATATTAAGAAAAAATGAATGAATAGTAATAATAAGTAAAGCATATGTTACTCTCATAAATAAGGGGAAAAAAAGAAAATAATAAAAAAAAAATTGAAAAAAAACAACAACAAACAAACAAGGTTCTACTCTTCTAAAATGACTGAGGGGTCCATCTTTTTTACGTGATCTAAAACAGGTTTCCAGATGAGAAAAACATATCAGTACGGCCTCCTAGAGTGTATCGTATTTTTTCTAAGGTCAGGTGGTGTAGAAGTTCGTAAGCCATTGCTTAAAGGTTGGAGGAAGTTTTTCCTTCCATTTCAGCAATATTAATCTTCTAGCTAAAAGTGTAGCAAAGGCAATCACATTTATCTTGCTTTTGTTAAAACATAAGGACTGTGGTGTGATCCCAAAAATTGATATTATGGCCTCAGGTTCTACATAGGTGTTTAATGCGTCCGAGAGGAACTTAAATATTAGCTGCCAGAATTTCTTTAATTTTGAACAAGCCCAAAACATATGAGATAAAGTAGCTGGCTCAATGTTACATTGGTCACAGTTAGGGTCTATATTTGGTTTAAATTTGGCTAGTTTCACTTTTGACCAATGTAATCTATGTACTACTTTAAATTGTATAACTCTGTTTTAAACAAATTGAAGATGAGTGGATATTGTCTAAAACGGATTGCCACATATCTTCTGATAGTTCTATCTCTAGCTCCACCTCCCATTTTCTTTTTAATTTTAATAGGGGTTCCAAATTGTGGGAATTAATTATAGAATGTATTTTAAAATGACCCCAGACTTTTAACCTATAGATAGGGCCAGATGGAATCTGCGGATGTTTTTTGCTATTTCTGCAGAGAATTTTAGTAAAAATCTGCGGATTTCTATGGAATCATTTTGGAAGTATCCAGCAGAGTATCAAAACTAAAACCTTAATATATAAAAACAAAAAGTAATAAATTACTGAATAAAAACTGAAAAAATTAGATTTACACATTTACTCAAGTAAATAAACAGAATTAATGATGGGCAAAAAATCTGCAGAAATCTGCGGAATTTTGCGAAAAATCTGCAGAATTATGCGCGCGCAGATTTCGTGTGGGGCTACCGATAGATTATATTAGTTTGTATACAGATATCTATAGGTTATATGTACAAGGATTTCCATGGGAAACTATTTCAAAATAGTTTCTATAATGCCGGTTGATCTTGACTTTTTTCAGATTAGGCTGATGAACGCACACAGTCTCTCTCTCTCATACAGGAACTCTTAGCCTCACAGACAAGACTCTTTGTTACTTCGAAAGATTACAAAAATATACAAATTGGCTTAGCAATGACACAGAGGATCAAAATCCTAGTTGGCACCAAAAATGAGCTTGAGGATACCAGTGTAATACAAATTCAAAGGTACAGAAATCGATTTAATGGCGATAAGAGTCTCACAGGCAGGTCCAGAGTGCTCCAGGAAGTCATTTTTATCTGAAACAGGTGTGTAAAAGATCCAATCATAGCACACCTTCGTGAGATAAAGAAACACAAATGCAAAGAGCAAAGTGCATGGTAAAGAGAGAAATAGGGAAACAAATAAACAAAATCTTCTCCATACTTCATGGAGATTATTTCAAAGTTTATACAAAACTCAAAAGGTTTGTAACAATGATCTTAAAAACATTTTTGGTTTAAAATTGAAACTTGTGGAATGTCTGGACGACTGCAAAGCTGCCTGTTCAGCTACCAACTCCATTAGCACACACGCACACCCCTACAGTTCAAGTCAGAATTATTAGCCCTCCTAAATTCTTAGCACCCCTGTATGTTTTTTCCCCCAATTTCAGTGTTAACGGATTAATAATATTGACATTAAAATGTTTTAAAGAAAAATACTATAGGAAATACAGTGAAAGATTCCTTGCTGCTGTTAAACATCATTTGAAAAATGTTTTGAAAAAGAAAAAAAAAAATCACAGAAGGGCTAATCATTTTGACGTTAAGTGCTCAACCTACCACTTTATTTTTCTCTAGTTTATATAGACAATTTTTGTCTCAGCACACAAAACTGATGATCTAATCGAAAGGATTGCATTAACTGCATTGTGCTGCTCTAAAGCTCCTGCTGTTTTTGTCTCAG
Seq C2 exon
AACTACAGTTACACTCACCTGTCCGCTGGAGATCTCCTGAGAGAGGAGCGCAGCCGCACCGACTCAGAGTTTGGCCAGCTTATTGACAGCTACATCAAAGAAGGGAAGATAGTTCCTGTTCAAATCACCATCAACTTACTGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019924:ENSDART00000014088:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040617=ADK=PU(10.4=35.4)
A:
NA
C2:
PF0040617=ADK=FE(29.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]