GgaINT0035246 @ galGal3
Intron Retention
Gene
ENSGALG00000010481 | KCY_CHICK
Description
NA
Coordinates
chr8:22661517-22669261:+
Coord C1 exon
chr8:22661517-22661702
Coord A exon
chr8:22661703-22669114
Coord C2 exon
chr8:22669115-22669261
Length
7412 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GTTTCTTTTGCACTTTTCAGAAG
3' ss Score
7.64
Exon sequences
Seq C1 exon
GGCGGGGACACCTCAGCGGTTGGCGGCGGCTCTGCTTCAGCCCCATCACCGGTCCCGGCCTCGGCGCCCACCGCTGTCCTGCTGCTGCTCCGCCGCCGCCTCCTGCTCCTCATGAAGCCCGTCGTTGTCTTCGTCCTCGGCGGGCCCGGGGCGGGTAAAGGGACGCAGTGCGCTCGCATCGTGGAG
Seq A exon
GTGAGGGCGGTGGAGCGGGCACTGCACTGGGAAGGGGGGGGGAGGGGGGTTTTTGAGGGACTACATATCCCAGCATGCCCCAGGGCTGGGCTACGGGGCGCTCTGCAGGCGCTGCCGCGGGGCACGCTGGGGGTTGTAGGCTGCCGCTGGGTCCGGCCCCGGCCGCCCCCAGAAGCGAGGGGAAGGTGGCTGCCTGCGCCGCCTGGGGCCGAGCCGAAAGGCCGCGGCGCTGGGTGGCGGTGGGTGGCAACGCTGCGGCTCGCAGGGCTCGAGGGCTGCGCCCTGTGCATCTGGCAGCGCGACGTGGCAGGGAGGTGGTTCTTGTGCTGCTGCCAGCCCTGCACCTTCTGAACGGGGGCTGCTTTGTGCCGTGGTAGAGGTCAAAACGTGTTCCATAAGGTTACTGCTGCTCTCGCTTTCCATCTGATAGCGTAGGATGAGGCTTCCTGCTGTATTTTACCTATTTTCAGTTTTCCAAATAGGTTTTGACAACCCTGTGAGGTCGAACGAATACCAAAGACAGGAAGGTGCATGTTGCGTTCAGGCACTGTCCTCTTAAAAAACAAACCCAGCAGTAATTGTACAGCAATCCCCATTATCAGTGGGTAATTACAGAAGCATTTAATGCCTGAGTGCTTTCGAACACATCTATGTTGGATTTGTATGTTTGTTTTTTCCCCTGGGCAGCAGTACGTTCTTTTTCTCATTGAGATCTGCAAAGGCTCGAGGTTTGTCCAAACCCACGCTGAAAGAAATGACAGAGCTACAGCAGTGCCCGTGCTTCTGAATCTATTAATGGAAGGAAGAAACCAAGCAAGGCACAAAGCCCCAGTGCCTGGCACAGTCATGCGTGTCCTAGTTCTAATGCTGCAGGTTCCCTCTGCTGTTACATCCCTGTCCTCTGCATGGAGTAACTCAGTTATGTGAATGTGATCTGCACTGAAAAATGCCGTTATGCAGAGTTCTGAAAGGCTTTAACCTCAAATTATAGACTGTTATTCAAACCGGCTTTGTCCTTCCATTAAGTGGTGGGATGAAAGGCTCATAGCGTTTGTAAAGCCTTTTTGGTAAGGTCAAATTCTGTCCCTGGTACATAGCAAACAAATGAGCTTAAACTGTAGGGAGTTTTTGTAGGCTGTCATTAAAGGCTTTTGCCAAACCATGAGTGGAGCCTCAGGGCTGAAATGCCTCATGTGGCTGTTGCCATGTGTTTAGAAGTATAAATGCCTTTGGCTTTATAGGTTAATATGATTTGGTAAAGACCGTGTTGATAGGAAGGATTCAAATGAGTCATTTCTACTCAAACTGGAACTGCAGCTAAAAATGGAAACAGAAAATTCACTTTATTCGTACTGTGTTTATTTTCTTTTTGAGGCTAGCAGCAGAAGTCCAAAAGCTAATAAATGCAGACTTGCTCTAACCCTGCACATCCCATTCACTGCATGAGTAAAAGCTCCTGACATCCTGTGCAGGAGTCACTGGCTTTGTTTTTTGAGAGAGAGGGTCTGAGGAGGCCTGGGCTGGGGTGAACGTGGTGAAAAATCTTAAAAAGAGCACAAGCACGGACACGTGGATGAAATGCAATTGAGGTGCTGTTGAGCAACAGCTTTTCTACGTGCACACCTTTGGCCTGGTCCTCACAGTCCCTCTGAGAGCCCTGATGCAGGCAGTTGAACAGCCTTCATACAATCAATGCTGTTTTCAGGTTGAAAGTATAGTTTAGTTTGGATTTTAGACCCTGTTGGCAGCTTGCCACAGAGAAAAGGAGCCGTGACTGAGTCATAATAAACCTCATTCATCCTTGCTGTATAAACGGACTGATTAATATTAGTTTACATTAGGAATGAATCTGATCCCGTATCTTGCTCTAAATCTGAAGTTTGTGCTCAACAAAAAGTCAGTATGTGTTATAAATACTTCTCAGTTGCTGTACATTCTGGAGATCTGGGACAGAGCACATGACATGCAGGAGGCTTGCTTTGCTAAGGTGAGATCTTGTTTAATTTTAGCTTCAAGTGGTCTTATTCAAAAACAACAGTAACAGTGGAGCAGAAGTCATATTGGAATCAAAATTGATAAGGTTGGAAAAGACCACTATGATCATCTAGTCCTACCATCAGCCCATCACCATCATGCCTGTGTACTACCCAGGATAAGTTTCTCAAAAAAGTGTCATAATTGTTTTGCTGACTGTTTTATATTGCCTGAGAAAGGAAATGGCATCAGTCATAGTGCTTGGGAAATACAGATTGCACCCACAAAGCTAAATCTCAGCTTGTGGAGCCCCACCTAGGGATGTGTTCCTGTCATATTTGGACCAAAGTGGAGAAGTGATGTAAGGGCAGAATTTGCAGTAACAAGTGGGAATGGGCATTGACACAGTGTACAAAAGGGAGCAACAGGTAAGCGATGAGGTTGCATTATCTTTGCATTTAAGGTTTAAAGAGACAGCTGAACCAGCCTGCTTTCTGCTGATAGGGAGAGAACACACACATATTCTGTATGTGCACGGTGTTGTCACAGAAATGTAAATGCAGTAGGAATGCTGCTCTAGACCAATTCTTCCTATTTATGAAGAGATTAAGCGGAATTCCCTCAAGTTTTTGTTCTCTCCCCATTCTGCAGATGAGCTCCTGCAACCTCCCACAGTAAGGGAGCTTCTGATGTCACCTGAAGCTGGTGCATAGCTTGTTGGGTGTGGTGCAGTATCTGACAAGGTAGTTCAGATGGCATCTGAATGCAGGTGCTTGAGATAAGCACCATGAAGTGCTGGAAGGTCATATCTTTTGTGATGGTGAGATTACTGTGTATGTACGAGACAAAATGAATGTGTTTTATTGCTGATTTCTGAACTTTGCCTCACAAAAACATTTATGGTACAGTCAAGGAAAAAATACCTCATTCCTCAAATCTGCACAGAAAAAAAATGCTTTTGTTGAGTTAAAGTTTAAAGCTTTACAAACTTTAACTGAAACACAGAGCTCTACTGGGATGGGGGGGGGGGAGGAACATGATAGCTAAGTTTTTAGTCTTTATTCCAAGCAAGGTTTCAACTGATAGGGTTTTTTTTTTTTTTCTATTTTTTTTCTGTTTGTTGTTGGGTGGTTTGGTTTCTTTTGGCTTTGTTTCAAAGTGACTGTGGAGGTTTGGGGTATGCACGACATCCTCTGTGCACACAAAATGTATTCAGTCTCCACCACAGGCCTGGGCTGGATGCTTGTGCTGCATTCCAAAACGAATCCCACCAAGTGGGACACTGAGCCTTCTCCTTCTGTAAGAGTGTCAGTTGGTATCCAAGTAGAGAAAGGTATGAAGTTGTTTTGGGATATACAATAAGGAGGTTCTCTAGGGAGAAGAGAACTTTGGGAAGAACTCTTTGTTTCAGGAACACTCCTCTGGAAGCAGCAGTAGATTTAGCTTTTGCTATCGTGTTAATTGTCTTCTGGAAGTCTGTTGAGAGACAGCATTAACTTTCTTGCAATGAGAACATTTTATAAGTTATTTGCTTTAAACTCAGTTTCTCAAATCTCTTCCAAGAGTGCCAAGTATTAGTAGCCCAGTTAGCTGTGAAGTTCTCATCATTGTTTGCTGGAATGTGAGTTCTTATTCCTGAACTTTGGAGCTGTTTTGATTGTTTAAATCTGTTTTTTCTCCTCTAAAGATTTATTCTCTATATGCTTCCATTTCACAGAATGCAGGCTTCCTCTCTAGGCATTGAATTTTGGCCTTTCTCAACCGTCTCATTGAGCTCAGCATTCCTGCAGCACTGGGGTGTTCTGTTTGCCCCCTCTTTCCGGAGGCGCTGTCAGTGGGATCTCCTTTGTGTGTTTTGTTTTGTTAATGTGGTGTGGGTTTATGTTGTTTTATTTTGCCTTGTGTTTTGTTTTTCCCCAGAGGCACGAGCATATCTCTAACTGGGAAAATAGTTTTTGGCTGGAACAAGCGGACAGGAGGGCTGCTATTGCGATATGATTTATGCCCTAAAGTTCTCTTTCCACATGTCGATGGCACAGACAAAACATTTTTAGATTAAAAAAAAAAAAAAAAGAGGGCTGCGTGCTTTCCAAGGTTCTATTTTTATTTTAACCAGTTCTCCAAGAGCATACCTGAGAAAATATAGCAAACTGTGGTTGTTTAGTAAGATTGCTTAAGGTATGACAATCCGGAACTGGGGCAATAAACGTTTGTATTGTGTTTGTTTAGCCCTTTGACTTTCATTTTTCGGATTAACAATGATAAGCCAAGATAGGATTCAAGGTCAGAGCGGTAGTTTGTTTTGCTCTTTGCTTTTTCTTAGCTTCTGCTCACTCGGGGAGGTTTCAGACTCCGGATACTGCTGTGTTGGGGAAGAAACTCCGGTGCCCTGAGCAGGCTGGCAGCGGGAGGAGTCCCAGCAGCAGCTGATCCTGTCCTGCTGCATGGAGAAAGTTGCTAGAGTGAACTCTGCCCTATTCAGGAGTGGCATAGATATGACTCATCTGTTCTCATCTGCAGTTGATATTAATCTATTTATTGTATTTACAGTAAGTAAAGCTTGCTCTGTCTATGGAGCAGAAGTTGCAAGTCCTGGCTGACAGTCCAAGTTTGCCCTGCTGAGTGGGGATGGTCTTTTCCAGGTCTTTGTATAAAGAACAAGCAAGCTGTGGTTTCCTCTGTTTTACAGAGCACTGCTAGATGCTGTTCTAAGGAAAATCTCTCAGCTGGGATTGTCGGAGACTTAGACTTGCCTTTCTACTCCACAGAGACCTTTGAAAGCGAAGGAGGAAGGTGTCTGCAGTGGTGCTGAAGATAGATGAGATTTTGTCTTTTGTTGACAACTAATTTTTGTAAGAGACTGGATTATGGTTCCCCGAATATAAAAACGCTTTTGGAAACAATGAAAATGGCTTGTTTAGTAGCTGCATACTGATTTAGTGTTTTGTCATAGAAGAACATGCCTGTCAGCTATCATAGTGGAAAACTAATCTATGAAATATATCTTGGAATATTTTCTTTTCTGTCCTCCAATCTAAAAATCTGTTCAGATTTTAGGTGCTTGATATCCAAGTATTTTGAATTCTTTGGTTTAAGCTATTTTCTCATGAAAGTTGTCCTTTCAGGCCTCTGCTAACATCATGAATCTAACATATATGCATTCTTGAGAACTGAAGAAACTGCTTTTTCATTATTTGAAAGCTACAACCATCCCTTTCTGACTGTGAGGAGAAGGCTTAGGCAGTGGTTGCTGTAATCCCCAGGATGGAGCTTGTTGCAAGCTGTACTTGGCGCTTGTGGAAGTTGTGCTGGCACAGTGCAGACTTGTAAGACGTGAGTGCCTTGCCCCAGCTGTTGTGCAGGAACATTGCAATCTCTTTTGCAAGCTCTTGGGGAGGCAGAGATTTGGTCCAGCTCTGGACGCTTGCTGAGGGTTTGTCCTGCCTGAGATGAAAGAAGACGTTGTGTCCTGGACACGTGGCTTGATTCAGACTGGCGAGAGCAGCGTGAGCACCACATCTCTGAAGCCTGCTGTGTGTGGAGCAGCAGTCCAGCCTCTGTCTGTGCTGTTGGTGTTGTTTAAGCTGACATGTTGTCTTTGGCTCCCGCGTTCCATGCAGTTAACAAATAGATGTTTTGCCACTGAAGGAGAAGTTTGTTTATCTTACTGCCTGGTTAATACATTCTGAAGGTTACTCTGGAAGACAATTTACTATTATCTAAAGCAACTCCATTTATACAACAGTGCTCTGCAGCACTTCTGTCTTTTACTTCCCTGTTCAGCCCTTAAGAAATAATCCCGCTTGCTGTTGCAACTGACAGAAAATTCCAAAAATTGCCTGACTCCACTTCCTTTTTCTGCACGAGAAGGGACATGCCAGAGAAAATCAAATGGGTTGGTAATCCTCTAAAACAGAAGGGATTATATTTTCCTCCTGTTTTCTTCTGCGTAGGAACTTAATGTTAAAAATATCATCGTTCTTTAACTGTACAGAGAAGTCCGTGTTAATTTAGGATTCGGCAAAGTAAGGTTTCCTGCTTAAGAGAAAAGATTTACTCTGGTTTACAGTGTCTGTAGTCCATAGTTAATATGCAGATTTGTAGTTAAATAAGCATATCCAAACGCAGTGCACATGAAAGCAGGAGTACACTGAGCTTACAGGGGATGGCAGCGGAGGTTTTTCTTCACAGTTACTTAAAGCAAAATCTTGTTTCCTTTTCTTTCCAGATGTGTAGCATTTTGGAGATTTAGGTAATTATATCCCTTCTTAAATTATGACTATGCAGAACAAACTTTCCACGCTTTTGTGGGTGAAATTGGAAAGCAACTGAAATGTTTCTAAAGCCACTTAGTGGGTTGTGTAATATTTCTGTTGTACTTAGTCCAGTCACCAAGTTTGTAAATCCCAAGTTCACAGCCTTAACGTGCATTTAGTCACATTGATTATCCTGTTCAGGCACTGTCTTTGAAATTTGCTTTGGAAGCTGCTGCAGCCAAGCTGATAACCCTGAAGTAATTTGCTGCTGCTTTTGTTTTGTGTGAAAACTTCAGGACAAATATGTATAGGTGTACTCTGTTTGCGGTGTATGGCTAGCTTAGCTGTTTTATTGCCAGTTTAGTTTAAGTATTCATCAAGGAGATGTCTTTATGCTTGTTTTTATGTAGTATACTTGCCCAGGGAGTGTGCTTGGTTAGTTTTCTGGTGGTACTAAATGAGCCGAGCAAAGGGTTGTTTTGTGCTCTGAATTTTCCTTTATAACAACACATCTGTGTTTTTTACAGCAACGCATCTGTAGCTTTGCACTGGTTTTCTATTTATGATTGTACATGCCTGAGAAATTCAACTATAACAACTTTCACCAGCGTTTCACATTAGCAAAGCTCTCAACTTTTCTTTGAGGTGAAGGAAGAGGCTCGTGGTGTTTGATGTTCTCCTGCATGCTGATCCCAAATCAATAGACTTGGACCTGATCTCTGCTTTTTTGCAGCGCGTGGTGTTAAAATGTTTTGGTGGTTATTAGTCAATAGATCAAGTCATGATTTAGCAAGTGAAGAAACTAAGCAGTAAATTTGTGTAGGATGGGGGTGGAGCTCAGAGAGAGTCTGGAGTTTGTTAAACGTCTCATTGTACAATGCAACATTGCAAGAAACACCCTGGGGACTTTGAGACCGTCATATTTCCAAATGTGACAGTGCTACCTTTGGAAACAGGACACGAATGTCTGCCCAAGGCCCTGCTGACCATTCTGCCCAGGAATCTCTCATTGTGCTTTCTGTGCATCCTGAAGATGGAATACATCTGTCACCAGCAAGCTGCTATTTCCTGTATTTTCCTGTCGTAATACAAAGATAAATGTGGCTGATAGTGTTGACTGATATAAGTTTGCATGTGTACTAATTCAAGGGTATCTGTGCCTGTTTCTTTTGCACTTTTCAG
Seq C2 exon
AAGTACGGCTACACGCACCTTTCTGCTGGCGACCTCCTTCGAGACGAACGGAAAAGGCCAGGCTCACAATATGGAGAACTCATTGAGAACTACATTAAGGAGGGGGAAATCGTACCAGTTGAAATAACCATCAGCTTGTTGAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010481:ENSGALT00000017068:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040617=ADK=PU(10.4=68.0)
A:
NA
C2:
PF0040617=ADK=FE(29.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]