DreINT0058282 @ danRer10
Intron Retention
Gene
ENSDARG00000103383 | dnah9
Description
dynein, axonemal, heavy chain 9 [Source:ZFIN;Acc:ZDB-GENE-020925-1]
Coordinates
chr12:175475-176167:-
Coord C1 exon
chr12:176015-176167
Coord A exon
chr12:175601-176014
Coord C2 exon
chr12:175475-175600
Length
414 bp
Sequences
Splice sites
5' ss Seq
CAGGTTCAC
5' ss Score
1.23
3' ss Seq
GCATCTGTTACTGTTTCCAGGTT
3' ss Score
7.69
Exon sequences
Seq C1 exon
GTTCAGAAGCATCTGTCCAAGTTGTTTGACAATATGGCCAAGCTGCAGTTCCAGGCGGGCGAGGACGGCGGGCTCCAGAAGACCGCTCTGGGCATGTTCAGCAAAGAGGACGAGCACGTGCCCTTCAGCCACGCCTGCGACTGCACCGGACAG
Seq A exon
GTTCACACACACATTACCCACAGTGCACTGCAGACCAAACCTGTGATAGTGACACACACTGATCACTGATGAGCTTATTCAGAAGAGCAGTGCTGCTAGCAATAAAATTAATGGAACATATATTCATTTAAAGTGTTGATCATAAACGAGTGTCAGATCTCTGTTACAGTCATATACGCTGCTCAGAACCAGATCTGTGCATATCCATTAGATCAGTCAGTAGCAGAGACAGAACTGATCTAACACACACTGAAGATCACAGTACAGACTGCACCACACACACATTCATATAGCAGTGAGACATATTCATATACAATCAACATGAAAACATCACATTTTGTGGTTTGTAAATTTGTAAAATGGGTTATATTAGGTGTACCTGTGCAGAATGTTAGCATCTGTTACTGTTTCCAG
Seq C2 exon
GTTGAAGTGTGGCTGAACCGTGTTATGGACAGTATGAGAGCCACTGTGCGTCATGAGATGACCGAAGCCGTCGCTGCCTATGAGGAGAAACCCAGAGAACAGTGGCTGTTTGACTACCCGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103383:ENSDART00000161178:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=NA C2=0.048
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(12.1=100)
A:
NA
C2:
PF083938=DHC_N2=PD(6.5=64.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGCATCTGTCCAAGTTGT
R:
CGGGTAGTCAAACAGCCACTG
Band lengths:
270-684
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]