DreINT0060543 @ danRer10
Intron Retention
Gene
ENSDARG00000060948 | dync1i1
Description
dynein, cytoplasmic 1, intermediate chain 1 [Source:ZFIN;Acc:ZDB-GENE-061215-62]
Coordinates
chr16:25417952-25418334:+
Coord C1 exon
chr16:25417952-25418096
Coord A exon
chr16:25418097-25418193
Coord C2 exon
chr16:25418194-25418334
Length
97 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
3' ss Seq
CTGTTCCATCTCTCTGACAGCAT
3' ss Score
8.37
Exon sequences
Seq C1 exon
TAAGGCTGGTATTGGTGAAATATTTGATGGGCATCAGGGGCCAGTGACTGGAATCAGCTGCCATAATGCTGTGGGTCCGGTTGACTTCTCCCATCTCTTTACCACTTCCTCATTTGACTGGACAGTCAAACTGTGGTCAACTAAA
Seq A exon
GTAAGGGTTGTTTTAGCCTGTCTATTGCTTGAAGGGTATTTTGATCATTTGGCACTGACTTTGCATCCTGAATATGACTGTTCCATCTCTCTGACAG
Seq C2 exon
CATAACAAGCCCCTGTATTCCTTTGAAGACAATGCAGACTACGTATATGATGTCATGTGGTCTCCAGTTCATCCAGCACTCTTCGCTACAGTTGATGGAAATGGTCGTCTTGACCTCTGGAACCTTAACAATTACACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060948:ENSDART00000086409:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=WD(100=85.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGACTGGAATCAGCTGCC
R:
TGCTGGATGAACTGGAGACCA
Band lengths:
182-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]