DreINT0065101 @ danRer10
Intron Retention
Gene
ENSDARG00000019808 | evpla
Description
envoplakin a [Source:ZFIN;Acc:ZDB-GENE-030829-19]
Coordinates
chr6:17960787-17961455:+
Coord C1 exon
chr6:17960787-17960886
Coord A exon
chr6:17960887-17961300
Coord C2 exon
chr6:17961301-17961455
Length
414 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGA
5' ss Score
4.17
3' ss Seq
ATCTCCTTCTCTTCGCTCAGGAT
3' ss Score
8.6
Exon sequences
Seq C1 exon
AACACAGGTGAGCAATCTGGCCTTGCTGATTGCACGTATGCAGAAAAATGCAGACACTGTTGAGAAAGATGTACTGCGCGCAGAAGAGCTGCTGCTCCTT
Seq A exon
GTAAGAAGCACTTCATTTTTTATAAGCATGATATATTACTAGTACTACTAAGAATAGTAATAATAACAATAATAAATTGTTTTAACTACAATTGGTTTGCATAAGTTACTATTTACTAACATGATATTTTACAAACAATTAATAGTTTTTACAGTATTTGTCTCTATTGTTAATTGTTAAATCCCAGTAAATTTAATGATGTTAATAAGCACACTTTTAGATTTTATTAATGCATTGGTACATGCTGAAAAATGATTATTAGTAGATGATGTAAAAGTATTATTCATTCTCAGCTCCTGTTAATAAATACATAAAAACATTAACAAATGCAACCTTATAGTAAAGTTATAATGTGGTGCTGTTAGTTTTAAATGTAAAACACAAAAATACCTACATCTCCTTCTCTTCGCTCAG
Seq C2 exon
GATGCTGAAAATGAGAAAAATAATAAGACATTACAGCATCAGAAAGAAACAGCAGATCTCCTTGGCCGGGCAGAAGGGCTCCTGAAAGATCTGTTTTTGGATATGGACAAAGCCAAGAAACTGCAACACCCTCAGGCAGGAGAAATAGAGAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019808:ENSDART00000143263:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.462
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACAGGTGAGCAATCTGGC
R:
CATTCTCTATTTCTCCTGCCTGAGG
Band lengths:
254-668
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]