HsaINT0058518 @ hg19
Intron Retention
Gene
ENSG00000214860 | EVPLL
Description
envoplakin-like [Source:HGNC Symbol;Acc:35236]
Coordinates
chr17:18284216-18284835:+
Coord C1 exon
chr17:18284216-18284314
Coord A exon
chr17:18284315-18284680
Coord C2 exon
chr17:18284681-18284835
Length
366 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TGCCCATCCCCTGCCCACAGGAC
3' ss Score
11.53
Exon sequences
Seq C1 exon
AATGCCACCCAGGAGCTGACCCTGCTCATCTCCCACATGCAAGCCAGCGCCGACCAGGTGGAGCGGGACATCCTGGAGACGCAGAAGAGGCTGCAGCAG
Seq A exon
GTGAGAACCCGGCAGCAGTTGGCAGGGTGTGGGCAGGCTGGGTGGCATGGGAGGCCCATCATCAGGCCTGGCACTCCCTGAGTGCCCCCTGGTGATGGTGAAGATGGGACAGATGACATTTGTCCTGCACCGCCTGTCCCCTAACACACGGTGGGAGAGAGGGCTCAACTTCCTTCTTTGCTGGGCTCCCCTGTGTCTTTGTCACCTGCCTCATGGACGCCCTGGGCCTGACCCTGTGCCTGGCGTGGGCCTCGAGGTTGGCCAGCATAGCTGGGGTCCCAAAGGTGGGGCTCAGGCCCACAATGATGGGCAGCAGGGGTGTGGGGGCTCTGGACCCTGGCAAGTCTGCCCATCCCCTGCCCACAG
Seq C2 exon
GACCGGCTGAACAGTGAGCAGAGCCAGGCCCTGCAGCACCAGCAGGAGACGGGCAGCAGCCTGAAGGAGGCCGAGGTGCTGCTCAAGGACCTCTTCCTGGACGTGGACAAGGCCCGGCGGCTCAAGCACCCGCAGGCTGAGGAGACTGAGAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214860-EVPLL:NM_001145127:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.952 A=NA C2=0.712
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCCACCCAGGAGCTGA
R:
TCCTTCTCAGTCTCCTCAGCC
Band lengths:
254-620
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)