DreINT0070525 @ danRer10
Intron Retention
Gene
ENSDARG00000029248 | fubp1
Description
far upstream element (FUSE) binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2159]
Coordinates
chr2:8854390-8855653:+
Coord C1 exon
chr2:8854390-8854461
Coord A exon
chr2:8854462-8855595
Coord C2 exon
chr2:8855596-8855653
Length
1134 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TTGGTCATTCTTCTCCACAGACA
3' ss Score
9.32
Exon sequences
Seq C1 exon
TCATTGGAAGAGGAGGAGAACAGATTTCAAGACTGCAACAGGAATCTGGCTGCAAAATACAGATTGCTCCTG
Seq A exon
GTGAGTCAAAAGTGAAATGCGTATTGGATGGTTTACACTGAGTGGTGTGGTTCACACGGGTCATGTTTATCATGCTTGTGTCTCCACTGCCAAACGGTACCCTTTTGATAGGCGTGGTGTACGACAGTTACGGTCGTTGTTATTTTCGCACAAAGTAAAAGCTGTAAGGGATTTTCACACATTGCATAAGAAGCACTTCTATAAATGTTTACAGCATTTGGTGATTGCTGCTGATTAATGCTAATGAGAGTTACTGAATGTCTGTAATTATAAAATCTATATGAACACATACAGACCATTACAGTCTCCGAAATGTTACCGGTTACTGAAAAGGCCTCATTTGTGTTTAAAAAATCAATTTACAATCAGTACAAACCTCTCATCGATATCTTTATTCTTCTCCTGCAAGTGTAACCTCTTGTTAAAGTAATTCCATATTTCTGAGTTCATGATAGTCAAAAAGTCAATCATGAATTAACAATTGCAATTAAATTCTTAAGTTGCTGAAAGAATCAATTGCTCAAGCTTTTTTTTTTTTTCGCTCTCCAATCTCACGTTTGTATGTCTCACAAAGGATGTGAGAAGCACTTTAATAATCATACGCAAGTTGTTATTATTAGGCAAGTACACTCAAATAGAGAAAGTGAAATCACTCGCGCTTTACCGCACGCTTTTAGATGCCCCCGTAAACAAAAGACACAAAGCAGATTCTGTTCTATTTGGCATGTGAATGTTTGTCACAAGAAGGCAACCAGGTTTATTTGGCTTAGTCGACCATGGCTCGTGTATTATGGTGTCATGTCCTAGCTGTATATTTAAAAATGGGGCTTTCTTTGTTGCCATTCTCCTGGCTTGTTGCTTACATTGGTGATGATTCTCTGTAAACCAATAGCGTTCAACAGTTAGTCTAGCTTCACTTTTTTTTTGGAATTGTTCTGTTGTGCTAGGTACCCTTTGGAATGGGTACTCAAAGTGGTGTGTTACGATTAAATCATTTAGTGCTATTGACAGTAGAAGCAGACAAAAGAAGTGTACCATACTGTACCTTTCCGTACCACTCAGTGGGAATGGTCTGTATGTCTCATTGTTGTCAGTTTTTTGGCCTGACTGCTTTTTGGTCATTCTTCTCCACAG
Seq C2 exon
ACAGTGGTGGTATGCCTGATAGGTCAGTGACGTTAACTGGTTCACCAGATGCAATCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029248:ENSDART00000081442:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=0.900
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(38.1=100)
A:
NA
C2:
PF0001324=KH_1=FE(30.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]