DreINT0071471 @ danRer10
Intron Retention
Gene
ENSDARG00000060631 | garnl3
Description
GTPase activating Rap/RanGAP domain-like 3 (garnl3), mRNA [Source:RefSeq mRNA;Acc:NM_001128527]
Coordinates
chr5:32757623-32760735:-
Coord C1 exon
chr5:32760517-32760735
Coord A exon
chr5:32757741-32760516
Coord C2 exon
chr5:32757623-32757740
Length
2776 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
GCACTCTGTATCTGCTGTAGGTT
3' ss Score
8.64
Exon sequences
Seq C1 exon
GTGAAACTCAATCAAAACACATCTATAAGATCCCTCTGAGTAACCTAGTTGGAAGGAGCATAGAAAGGCCCCTCAAGTCTCCTCTGGTCAATAAAGTGCTCACGGCACCGGCCCCCAGCATGACCGGGCCTGCGCCCATGATCGGCAGCACCACCTCCCTCTCGCTGTCTCGCATGGAGATCAAAGAAATTGCCAGCCGCACACGAAAAGAGCTGCTGG
Seq A exon
GTGAGTGTCTGTGTTTGTGCACTCTTCAACTGAATGCTATCATTTATGAGTGTGTGGCGCAGTGGGATGCTGGCAAGAAATGGACCGCAGAGGAAATCTACAACTTCACAAGTGCTGCTGGAGATTTGTTTTTTGGGGTTGGACATTTAATTTCCTAAAGGATTTTCATGATGGATTATAATTGTTTTAAAGTAGTCATGAAATAAAACTGCATGACCATATTACTAGTATTAAAGTGAATGATTTATCAGAGCAATTCAATCCACAGAAAAAAATGGTCTTGAAAATATTGTATCAAAATCTGAGAATCATGGATGGAAATCCCCTTTTTGCTAAAGGGCTTTATAATGGGGTTAAGTCAATAAATAAAATAAGCCCTAGTAAACATTGACAATATTTCATTGACTCGCACCCCAACTGTTCTTTATTTGCTTATTATTAGAAACATATATTTTATAAAATACACAAAACAGCTTAAAAATCTATGATTTAGATCAGGGGTTCCCCAACTTTTTAGCCTGCGACCCCCAAAACAACAATCTCAGTGACTCACGACCCCCATTTTTCAAGGTGGTTATACTGTAAATATATAAATGTTTCAGACACAACTATAGGCATATATAAATATAATCATATTGACAACACAAAAATGAATCAGTCTAATAACCATATAATGTTTTTTTTATATTCATCTATTAATTTAATTACATTTTAAGATAAAAATTAATGGCTGATAGCTGATTTTTATTTGTATGTTGTTCTTTAACGCAACAATTAACTATCCTCTGTGGGTTATGAATAAAATATGGTGATTCAAATAGTTTAATAAAATTTATTTGAGTTTTGGAAATCACCAAGCGACCCCTTGTCATTGTCACGTGACGCCCCAGGGGGTCCCGACCCCCACTTTGAGAACCTCTGATTTAGATAGAGGAATAATCAAGTTGTTTTGTGCAGAAATTATTTTCTTAGAAATGGAAAACCCCAATATACTGCACTCAGTGAAATGAACTGCACTGACTCTCTCACAAGAAATTAATAAAATTCATTTAATTGTTGTTTGCTGCAATATTATCTAGATGTTTCTGGTGTATAGTATCTGGTGGTTCAAAGAGAAAATTTATTGATATAAACTTTTTAGATGCAAACACGTACATGCTCAATATTCGACTTTTTTAAATAAAAAAAGGAAGATAATTTATGCAGTCAAGCATGTGTTTTGATTATTAGTATGCCAGTGATTGATACCTTTACCAATATCAAAATGCTTTTTTGATGCAAAATTAATTCATACAGTTATTCCTTAAGCGGATTAAAAAAACTTGAGTAAGCCTAGACTTCTATAATAAAGAGAGTCTTGTCTAAATGTAGAACTAAATACATTGATATGCATTGAAATACATGATAAATAGTCTTGACACATGAAAGTGTAAAGCCTGCAGCTCACAACAAACGTGGGAAGTTTGTGCGTGTCATATTTAACAAACCATTTACTGCTAATTTGATGTAATTTTGCTCACATGGATAATTGAATATTAATCAGAAGATGTCATTACGCTGCTGTGTCATCAGCCAATCGTTGCATTGCTGATCATGATTTTGAGGATCCATAGATCTGTCTTTTACAACACACACAGCGATCTCAGATCAGTTAATCCAAACATTTTAATCTGATTCGTGAACTTGTTTGAACAACCAAATTAGCAAAAGATCAGTTATCAAGATGAACAGATCCAGGATATGCCAAATCATCTTAGATCATTTAAGCGAGGTACGAAGAACGGACCCCAGTTCATCCATACATCTTAAAACTGATTTGAAAACTTGTTTGCAGAACCAAATTAGCCAAAGGTCATTTATCAAGATTAGAAGATCCAGGACCCGCCAAATCATCTTGGATCATTTAAGTGAGATATGAAAAAAGGACCCCTGATCTTAACCAGATTGGAATTGTTTAGTTTTGTCAACCCAAAAATACTCTGCAATCCAGAGTTTAATCAACTTGTTTTGTGCAACAGGCCTCTGAGTTAGAATGTACGCCTAGGGTTAATGATCAATGTTAAATATAAGACAACCCAAAGGTAATTCTGACTAATAAACACCTTTGAGTGATCATTGTTCTGGTTTCACTGATAGGTTTACATAATCAGTGGGTCTGTTCAAAAACTCCAGATTTCTTTCCTGATTTATTTCTCATTTTAAGGAGCTCAGACAGAAGAACAACACTCTAAACAGCAACATCAGTCATAGGAATACACTAAAGTCGAGTAGCAGAGCTGTATTCACACCTTACCAATCGTTGGCAGAAAGATTTTAAATATTCAGATGGGGTCACGCTGGATGAGAAGCCCACCTTGTCATGTTTACCATCACTCAACCTTTTTGAACTTTTTTTGCCCTCAAACGAAAAACACCCCCAACTCAGAACCATTTATTAATAATCTTTTAATCGTGTGTGATAGAAATGATATAATGCTTTGAACACTTGATCTGTAACTCTTGTTCTGTAGTCTAGCACAGATTTTTCAATATGAAGTGTTGGAGTGAGACATCCTGATCACACATTAGATAAGCTGCTAGATTTACTAGACTGCCACACTTCACACCCCACAAACACACACACACGCAAATGGCTGAATGACTCTTGGAAAACACTACAGCACCTCCTACAGGTGCATGTTAAATGTCATTTTAAAATATCTGTTAAAGCATTTTCTATACAGAATCATGATATGTTGAGTGTCTAAGTAGTCTGTGCACTCTGTATCTGCTGTAG
Seq C2 exon
GTTTGACTGAGGAGCCCAGCAGTAAAGCAGATGGCAACTCAGTGAAACAGAGAAGAATGAGCAAGAAAAACAAAGAGGAAGAGCAGAAGAGAACAGCAGAGATCAGCATCGCCGAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060631:ENSDART00000085636:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.574 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]