GgaINT1013679 @ galGal4
Intron Retention
Gene
ENSGALG00000000847 | GARNL3
Description
GTPase-activating Rap/Ran-GAP domain-like protein 3 [Source:RefSeq peptide;Acc:NP_001025847]
Coordinates
chr17:10441742-10442397:+
Coord C1 exon
chr17:10441742-10441951
Coord A exon
chr17:10441952-10442285
Coord C2 exon
chr17:10442286-10442397
Length
334 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAAC
5' ss Score
3.32
3' ss Seq
ACTTTTATTCCTTTATTGAGGCC
3' ss Score
-3.14
Exon sequences
Seq C1 exon
GTGAAGTTGCATGTAAAAACTTGTATAAAATTCCTCTTAGTAATCTGGTTGGGCGAAGCATTGAACGACCTCTGAAGTCACCTTTGACTCCTAAAGTAGTCACTACTCCAACATCCAGTGGCATTACCTCTCTTCCTGTTACTCACTCACTATCCTTATCTCGCATGGAAATTAAAGAAATTGCAAACAGAACGCGTAAAGAATTGCTGG
Seq A exon
GTAAACTCCCCTTGTTCTTCAGTGTATATATCAGTTACCACTAATACCATTTCTAATTTTTGGAGCATCTTTGGACTAATCTCATTACAGTCAGATTAGTGACAGACAATCAGTGTTCATAAATAAGTAGCTCAAACAAAACAGTAAGAAAATGCTGTTTGCAAAGTCTAGATAGTGTCTGGTCATATATAAGGTGACCATATTCTAAGTCAGCTGAAAGGTATTTAGTTAAAAATGAAAATCCATGAAAAAATTAAAGTGGAAAAAGAAACAACATTTTTGTGAATGCTTTATCTTCTGATGAGAATATTAAGACTTTTATTCCTTTATTGAG
Seq C2 exon
GCCTCTTGGATGAGCCTATTCCCAAGACAGAAGGTGCACAGAAGCAAAAAAAGGTTTCTCGAAGACAGTCAGACCCCAAGCAGGGAGCAGTAAGATCAACTAGTAGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000847:ENSGALT00000001243:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.293 A=NA C2=0.947
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGTTGCATGTAAAAACTTGT
R:
CACTACTAGTTGATCTTACTGCTCCC
Band lengths:
318-652
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]