GgaEX0000852 @ galGal4
Exon Skipping
Gene
ENSGALG00000000847 | GARNL3
Description
GTPase-activating Rap/Ran-GAP domain-like protein 3 [Source:RefSeq peptide;Acc:NP_001025847]
Coordinates
chr17:10441742-10443313:+
Coord C1 exon
chr17:10441742-10441951
Coord A exon
chr17:10442286-10442397
Coord C2 exon
chr17:10443157-10443313
Length
112 bp
Sequences
Splice sites
3' ss Seq
ACTTTTATTCCTTTATTGAGGCC
3' ss Score
-3.14
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTGAAGTTGCATGTAAAAACTTGTATAAAATTCCTCTTAGTAATCTGGTTGGGCGAAGCATTGAACGACCTCTGAAGTCACCTTTGACTCCTAAAGTAGTCACTACTCCAACATCCAGTGGCATTACCTCTCTTCCTGTTACTCACTCACTATCCTTATCTCGCATGGAAATTAAAGAAATTGCAAACAGAACGCGTAAAGAATTGCTGG
Seq A exon
GCCTCTTGGATGAGCCTATTCCCAAGACAGAAGGTGCACAGAAGCAAAAAAAGGTTTCTCGAAGACAGTCAGACCCCAAGCAGGGAGCAGTAAGATCAACTAGTAGTGACAG
Seq C2 exon
AATAATCTCAGCCTCTTTCGAAAGCTATTCTGAGGGTCGTCATCTTTCCACTAGTTCAGATCCTGATTCTGTAGCAAACAGGGAGGAGAGCTCACCATTTAGCTATCCATTTCATCTGACTTCTTTATATGATGAAGACATCATTGACTTGAAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000847_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.293 A=0.947 C2=0.404
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACGACCTCTGAAGTCACCT
R:
AATGGTGAGCTCTCCTCCCTG
Band lengths:
248-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]