GgaEX0000852 @ galGal3
Exon Skipping
Gene
ENSGALG00000000847 | GARNL3
Description
NA
Coordinates
chr17:11172279-11175060:+
Coord C1 exon
chr17:11172279-11172494
Coord A exon
chr17:11172829-11172940
Coord C2 exon
chr17:11173700-11175060
Length
112 bp
Sequences
Splice sites
3' ss Seq
ACTTTTATTCCTTTATTGAGGCC
3' ss Score
-3.14
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
TTTCAGGTGAAGTTGCATGTAAAAACTTGTATAAAATTCCTCTTAGTAATCTGGTTGGGCGAAGCATTGAACGACCTCTGAAGTCACCTTTGACTCCTAAAGTAGTCACTACTCCAACATCCAGTGGCATTACCTCTCTTCCTGTTACTCACTCACTATCCTTATCTCGCATGGAAATTAAAGAAATTGCAAACAGAACGCGTAAAGAATTGCTGG
Seq A exon
GCCTCTTGGATGAGCCTATTCCCAAGACAGAAGGTGCACAGAAGCAAAAAAAGGTTTCTCGAAGACAGTCAGACCCCAAGCAGGGAGCAGTAAGATCAACTAGTAGTGACAG
Seq C2 exon
AATAATCTCAGCCTCTTTCGAAAGCTATTCTGAGGGTCGTCATCTTTCCACTAGTTCAGATCCTGATTCTGTAGCAAACAGGGAGGAGAGCTCACCATTTAGCTATCCATTTCATCTGACTTCTTTATATGATGAAGACATCATTGACTTGAAGTGAAGACAGACAAGACTGTTCCTTACTTCACCTTTTCTCACAACTCTGTGAGCTCTGTAGGAATGTCACAAGCAGTGCTTCTAGTGGTAAAATGTGGCTGGAAGTATTGGTGATTAATCTTTGTAAGTCTCATGTTGTTCTGGCTTGCTTAGCCTGGTTTGGTGAAGCTTACATCTTTGACGTCTGTATGTTTTCTCATCTCAGTTAATGAACCATTACTTTTCTGTGGTATTTTAAAGGTAGGTTATCAATGAGAGCTATAGGCTGAAATTGAACTAAATAAAAAGTATTACTTATTCTGAGCTACCTGAAGTAGCATTCCGTGAAGTTAATTGCTGTTACTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000847_MULTIEX2-3/3=2-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACGACCTCTGAAGTCACCT
R:
AATGGTGAGCTCTCCTCCCTG
Band lengths:
248-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]