HsaEX6063071 @ hg19
Exon Skipping
Gene
ENSG00000136895 | GARNL3
Description
GTPase activating Rap/RanGAP domain-like 3 [Source:HGNC Symbol;Acc:25425]
Coordinates
chr9:130151183-130155826:+
Coord C1 exon
chr9:130151183-130151398
Coord A exon
chr9:130152920-130153046
Coord C2 exon
chr9:130155362-130155826
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACCTATGATTCTCAATCCAGGCC
3' ss Score
7.36
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTGAAATTCAATCAAAAAATCTGTACAAGATTCCACTTAGAAACCTCGTGGGCAGAAGCATCGAACGACCTCTGAAGTCACCCTTAGTCTCCAAGGTCATCACCCCACCCACTCCCATCAGTGTGGGCCTTGCTGCCATTCCAGTCACGCACTCCTTGTCCCTGTCTCGCATGGAGATCAAAGAAATAGCAAGCAGGACCCGCAGGGAACTACTGG
Seq A exon
GCCTCTCGGATGAAGGTGGACCCAAGTCAGAAGGAGCGCCAAAGGCCAAATCAAAACCCCGGAAGCGGTTAGAAGAAAGCCAAGGAGGCCCCAAGCCAGGGGCAGTGAGGTCATCTAGCAGTGACAG
Seq C2 exon
GATCCCATCAGGCTCCTTGGAAAGTGCTTCTACTTCCGAAGCCAACCCTGAGGGGCACTCAGCCAGCTCTGACCAGGACCCTGTGGCAGACAGAGAGGGCAGCCCGGTCTCCGGCAGCAGCCCCTTCCAGCTCACGGCTTTCTCCGATGAAGACATTATAGACTTGAAGTAACAGAGTTGAATCTCATTTGCCATCTTTAGTTTTCTTATGGAGGTTTATACTCTTTAAACAGTTCTGATGTAATTTCTCAACAAAATGTGGCTTTTAGCCTGTCAGTGATCTATTGGACCAAACCTTCTGCACACTCGGCCAGTTCCCTCTCCAATGTCCGGTGCCATCTTTCCTGACCTTTGTTTCTTTCTGTTCAGGAACCATCAGTCCCCTTGTAATAAAGGTGGTAGATTTCATTGAGGTTTTAGATTGAAACTTTGAATAAATCAAAAATACTCATTCTTATTTACTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136895-'54-58,'54-57,55-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.320 A=1.000 C2=0.965
Domain overlap (PFAM):
C1:
PF0078017=CNH=PD(0.1=0.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTTAGAAACCTCGTGGGC
R:
GTCAGAGCTGGCTGAGTGC
Band lengths:
257-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)