MmuEX6100689 @ mm10
Exon Skipping
Gene
ENSMUSG00000038860 | Garnl3
Description
GTPase activating RANGAP domain-like 3 [Source:MGI Symbol;Acc:MGI:2139309]
Coordinates
chr2:32986224-32990779:-
Coord C1 exon
chr2:32990564-32990779
Coord A exon
chr2:32989506-32989632
Coord C2 exon
chr2:32986224-32986830
Length
127 bp
Sequences
Splice sites
3' ss Seq
GGTTTTCCTCTATAATGTAGGCC
3' ss Score
6.15
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTGAAATTCAGTCTAAAAATCTGTACAAGATTCCACTTAGAAACCTTGTGGGCAGAAGCATCGAGCGACCTCTGAAATCACCCTTAGTCTCCAAGGTCATCACCCCGCCCACCTCCATCGGCCTTGGAGTCGCTGCCATTCCTGTCACGCATTCCTTGTCCCTCTCCCGCATGGAAATTAAAGAGATTGCAAGCAGGACCCGCAGGGAACTGCTAG
Seq A exon
GCCTCTCTGATGATGGTGGAACCAAAACAGAGGGAGCACCAAGGGCCAAATCAAAAACCCGGAAGCGGTTGGAAGAAAGCCAAGGAGGCCCCAAGCCAGAGACTGTGAGGTCAGCTAGTAGTGACAG
Seq C2 exon
GATCCCATCAGGAATTTTGGAAAGTCCGGCATCAGAAGCCAATCCCGAGGGCCACAACCACTGGGCAAGTTCTGAGCAGGACGCTGGGGTGGATAAAGAGGGCAGCCCGGGCTCAGGCAGCAGCCCCTTCCAGCTCATGGCCTCCTCAGAGGAAGACATCATTGACTTGAAATAGAGTCTATGCCCTATTGGCCATCCTTAGTTTTCTTACGCAAATTTATACTGTTCAAGCAGCTCCAACGTCCAGTCTCAACACAGCGCGCCTTCGGCCAGGCAGCGATCCACGGACCAAACCTCCTGCGCCCTCAGCCGGTGGGTCACTTCTCCAGTGTCCAGTGCCATCTTTCTCGACCCTGTTTCTTTCCATTCAAGAACCGTCGGTCCCCTTGTAATAAAGGTGGTAGATTTCATTAAGGTTTTAGATCAAAACTTTGAATAAATCAAAAACGTTCATTCTTATTCTCTGCAACCCTTCTCATATTTTATAGGTTTAGATGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038860_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.274 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAACCTTGTGGGCAGAAGC
R:
AGAACTTGCCCAGTGGTTGTG
Band lengths:
251-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types