RnoEX0037759 @ rn6
Exon Skipping
Gene
ENSRNOG00000057044 | Garnl3
Description
GTPase activating Rap/RanGAP domain-like 3 [Source:RGD Symbol;Acc:1564019]
Coordinates
chr3:12034413-12042028:-
Coord C1 exon
chr3:12041813-12042028
Coord A exon
chr3:12040851-12040977
Coord C2 exon
chr3:12034413-12034587
Length
127 bp
Sequences
Splice sites
3' ss Seq
GATTTTCCTCTGTACTGCAGGCC
3' ss Score
8.2
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTGAAATTCAGTCTAAAAATCTGTACAAGATTCCACTTAGAAACCTTGTGGGCAGAAGCATCGAGCGACCTCTGAAATCGCCCTTAGTCTCCAAGGTCATCACCCCGCCCACCTCCATCGGCCTTGGAGTCGCCGCCATTCCTGTCACACATTCCTTGTCCCTCTCCCGCATGGAAATTAAAGAGATAGCAAGCAGGACCCGCAGGGAGCTGCTAG
Seq A exon
GCCTCTCTGATGATGGTGGGCCCAAGTCAGAAGGAGCACCAAGGGCTAAATCAAAAACCCGGAAGCGGTTGGAAGAAAGCCAAGGAAGCCCCAAGCCAGAGACTATGAGGTCAGCTAGCAGTGACAG
Seq C2 exon
GATCCCATCGGGAGTGTTGGAAAGTCCAGCGTCAGAAGCCATTCCCGAGGGCCAGAACCACTCGACAAGCTCTGAGCAGGACCCTGTATTGGACAAAGAGGGCAGCCCGGGCACAGGCAGCAGCCCCTTCCAGCTCACGGCCTCCTCTGAGGAAGACATCATTGATTTGAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057044-'51-56,'51-51,54-56
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.356 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAACCTTGTGGGCAGAAGC
R:
CTGCTCAGAGCTTGTCGAGTG
Band lengths:
257-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]