DreEX6011858 @ danRer10
Exon Skipping
Gene
ENSDARG00000060631 | garnl3
Description
GTPase activating Rap/RanGAP domain-like 3 (garnl3), mRNA [Source:RefSeq mRNA;Acc:NM_001128527]
Coordinates
chr5:32752522-32760735:-
Coord C1 exon
chr5:32760517-32760735
Coord A exon
chr5:32757623-32757740
Coord C2 exon
chr5:32752522-32756422
Length
118 bp
Sequences
Splice sites
3' ss Seq
GCACTCTGTATCTGCTGTAGGTT
3' ss Score
8.64
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
GTGAAACTCAATCAAAACACATCTATAAGATCCCTCTGAGTAACCTAGTTGGAAGGAGCATAGAAAGGCCCCTCAAGTCTCCTCTGGTCAATAAAGTGCTCACGGCACCGGCCCCCAGCATGACCGGGCCTGCGCCCATGATCGGCAGCACCACCTCCCTCTCGCTGTCTCGCATGGAGATCAAAGAAATTGCCAGCCGCACACGAAAAGAGCTGCTGG
Seq A exon
GTTTGACTGAGGAGCCCAGCAGTAAAGCAGATGGCAACTCAGTGAAACAGAGAAGAATGAGCAAGAAAAACAAAGAGGAAGAGCAGAAGAGAACAGCAGAGATCAGCATCGCCGAGCA
Seq C2 exon
AGTGGGCATGGAGTCTGTAGATGGAGAAACTGACATCCAGCAGCTCTGTCCATCTGGCTCAGAGGTGGAGGTGCGAGATGACAGTCCACCCACAGCCAACCCTTTCACCTTCTCCACATCGTTTGAGGATGATATTTTGGACCTTAAGTGATGACAATCACAGTCTGTGGATTAAAATGCGCCTCTCACCTTATTCATCTTCCTACCTTTTACTTTATATCACTCTTCTCATTGTGTTACGTCCTTCTCCCGCAGTCTGTCCACTCATCTGTGTGCAAATCAGTCCCCAGAGTTTACAGTGTGGCGATGTCAAAATTCACTCCTGGTGGATGGATGCATGTGTGTGTGCGTATGATCCTGTTTATTGGAAAGATAGAAATACAACTAATTATTAGCGACCATTTCAGAATTCTGCTTAGAGTAAAAACAAAACTGACCAAAAATGCTGAAAATGCCGAAGAATCTGAATTCTGTTTGATTTCGTTTCTATTATGGATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060631-'31-39,'31-38,32-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.574 A=1.000 C2=0.820
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGCATAGAAAGGCCCCT
R:
GACTGTCATCTCGCACCTCCA
Band lengths:
253-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]