GgaINT1013680 @ galGal4
Intron Retention
Gene
ENSGALG00000000847 | GARNL3
Description
GTPase-activating Rap/Ran-GAP domain-like protein 3 [Source:RefSeq peptide;Acc:NP_001025847]
Coordinates
chr17:10442286-10443313:+
Coord C1 exon
chr17:10442286-10442397
Coord A exon
chr17:10442398-10443156
Coord C2 exon
chr17:10443157-10443313
Length
759 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
TTTTGTCTTCATCTTTGCAGAAT
3' ss Score
10.68
Exon sequences
Seq C1 exon
GCCTCTTGGATGAGCCTATTCCCAAGACAGAAGGTGCACAGAAGCAAAAAAAGGTTTCTCGAAGACAGTCAGACCCCAAGCAGGGAGCAGTAAGATCAACTAGTAGTGACAG
Seq A exon
GTAAATAAATACGTGGGCTTTAGGAAAGAGCCTAAGTTAGACCATAAGTGTTTTGAGAATTGATTGCTTTTCAACTGGTTTATAGTTTTCCCAGTTGGGTAGGGATTGACTGAGGCCTTTGTGAATTTCATGCTAATGAGTGGTTTAGTATTTAATAACAGTGCTGAAATGCTTATGCATATTGCTAAAAGACATGTTACGAGTGAAGCAAGGCCAAATGGGATTTTGTGGGGAGCTACTGCAGTTGAGCCTGTCACTAGGATTTGAACTGCTGAATTCACATTGCAGACTGAATTATTGTTTTCTTCATGTCTTTTTGTCTCACTATTTCCAAAATAAATTTTGCAAAGAAGCATTAGTGCATTTGTCTGTTTGGCTCTGCTTACCAGACCCTACTGCCATTATGTTGTTTTCTCTGTTTTTATAACCTGCATTTGTGATGAGTAGCAGCAGAATTCAGCCAAGATACAATAGACTGAGATTAGTTTTTGTTAATCTGCTGCGGTGTAAAACTGTTTTGCTATTTGGAAATTATGTGGAGAGAGACAATTCATTAGTGTTATCTTTGGGCAATAATTTGATATTTGTAATCTTTGTTTTAATAAGAATTGTTATGGAAGCAGAGTTAAACAGTGAGAAACGCAGTTTTAATGATCTGTCTTTAGGATGACTTGATTGTATCCAGAAATAGCCATTGACCATACTTGCCCTTTTCTGTGTAATTTTTTTTTTTAGTGACTTTTGTCTTCATCTTTGCAG
Seq C2 exon
AATAATCTCAGCCTCTTTCGAAAGCTATTCTGAGGGTCGTCATCTTTCCACTAGTTCAGATCCTGATTCTGTAGCAAACAGGGAGGAGAGCTCACCATTTAGCTATCCATTTCATCTGACTTCTTTATATGATGAAGACATCATTGACTTGAAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000847:ENSGALT00000001243:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.947 A=NA C2=0.404
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCTTGGATGAGCCTATTCC
R:
TCACTTCAAGTCAATGATGTCTTCA
Band lengths:
269-1028
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]