RnoINT0064014 @ rn6
Intron Retention
Gene
ENSRNOG00000057044 | Garnl3
Description
GTPase activating Rap/RanGAP domain-like 3 [Source:RGD Symbol;Acc:1564019]
Coordinates
chr3:12034413-12040977:-
Coord C1 exon
chr3:12040851-12040977
Coord A exon
chr3:12034588-12040850
Coord C2 exon
chr3:12034413-12034587
Length
6263 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CAGCAGCTTCTGTCTTCCAGGAT
3' ss Score
6.58
Exon sequences
Seq C1 exon
GCCTCTCTGATGATGGTGGGCCCAAGTCAGAAGGAGCACCAAGGGCTAAATCAAAAACCCGGAAGCGGTTGGAAGAAAGCCAAGGAAGCCCCAAGCCAGAGACTATGAGGTCAGCTAGCAGTGACAG
Seq A exon
GTAAGAAGAAGGTGGCCCTGCACTGCTGTATGGTGGCTAGTGGACACCAGCACGCCCAGGTGTTGTGTTTTATAAAGAAGAAGGAAAGAACCAGGATCTGTTGGATGGAGCTGGGTATGGTCAGGTGGAAGGGTGCCTCTGTGGGCCCATGCTGAGGACCCCTTCCCCTGAGGGACCAGCCACACAGATATAGTATGGAATCGTTTATTTAGGGCATGGGAAGGGGAGTTGAGGATGGAATAGAGACAGAGAAAGGGGGGGGGGGTAGAGGCTGGCCAGGAACACATGGAGAGAGGGGAGAGAGGGATGGAGAAAGAGGGAAAAGGGGGGCAGGGAGTAAGACAGTAAGAGGATAAGAGAGTGAGGAGTGGACAAGCAGCTACTTCTATAGTGAGTCAGGCACACTTGGCTGTTGCCAGGTAACTGTAGGGAGGAACCTAGAAAGAATACCAACACTAAGAGTCTACTAGCCCAGCACCCTGCAAGGTCAGCACCCATCCCACTATGAAGGTCCCAGAGAGGACAGCTAACACCACAGGGCTGAGACAAGAGGACACTGTCACCAGCAATCAAACAAATGTTCACTAAAATATAATGAGAGGCTATAGACAGCTCAGCTAGAGCCTTGCCTGACACTCACAAAACTGTACACATGTGTGTACACATGTGTATGAGAGATAAACAAGACAGAAAGAGACTTTTTTGTAGTGTAGTTTTGAATCTCTACCCACCCTTACTCCAGGAGGTGACCATGATACCAGCCCCCACCCAGCTTCCCATGAATCCTTGGACAAAAGATACACAATTTGTTCCTTTTCTACTTGCCTTCTTGACACAATTGCTGGGAGCTTCTATCTCCCACCTGGAAAACTTGCCCTTATCTATCCTCTTAGCTCTGTACCTCCTACCCGCCCTAAACTTCAGTGGCTAGTTCCATCTAGGCCCTGCCAAACATCCATGACCACCCGCCTGTAATAGTGGCCACAGACCCCAGCTCCTCCTGAGACCTCACATGGTTGCCCAGTTCTCCTCTCCCCAAAGCACCTCAAACTGCCCCCCATCCCCTGTATTCCCCACCCTACCTTCAGGGGCCTGGAAGTCCTGCCTGTACCTTCTGCCCAACAATTGGCCCAAGGCTTTCTTTACTGATAGATCAAGAACCAATTGGGGAATAGGACTACCCCCTACACCTCACCCTTTCTGTCCAATAAAAAAAAAAAATTTAAAAAACTTTTTAAAAATGTTTTTTAAAGATGTATTTTATTTATGAGTACACTGCAGCTATCTTCAGACACACCAGAAGAGAGCATCAGATCTCATTACAGGTGGTTGTAAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCTCTTCTCAGACATAAATTGAACAAAAACATAACAATCACAACAGTTATATAGTATGATAGACAAATGACATATAGTCTATTATGTTTGTCAATTAGATAAAGTACACTACCACCATTCCTAACTGAAAGAATTATGATTCTATCCCTAGATTATATTTAGATTTTAGCCTGTAGCCCTATCTGAAAGCCATGTCTTCCAACCTAAAACCTCTCTCCCAATGTTAAACAACTTGAGTTTGATTATTAGACTAAAACTAATCTTCAACCCCATCAGATTTCTGAGAACAACTTAAACATCACCTGGGTATATAGGAAGCACCCAAACATAGCTTCTCAAACAACTGGAGAGACAGCTGACTACCTGGAGAGCCCCTCATTCCTCGAAACTTTGGAGAATCAGTCTTTGGCCTTCTAGCCCAGGATCATCTATCTGACAGACCCCTGCAAAACAGAATTATTAAGGACTGCTTACCCTGTCTTGGCAGAGCCAACAGTGCACTATTTTGCATAATGTGTCCTTTTCCTGGGCACTGTTTCATCTGCAGATCAAACAGGCAATTTCTGCCCAGTGGCTGCCTTGCCACTTGGAGGGTGTGAAGATGCCCAATTCTTCTTTGAACCAAGAAGAGGGTGCTGTGAAGAACAGACATGTCTCATTGTCAAATAATTAAATAATATTAAATGTCACATTCTGTGGATTTCTGATGTTTTTGAAGATTATATATATAAAGTAATCTGAAAGTTCAACCTTGACTACTCTCAGCCATTTCTAACTGAAATATATTGAAAACACCCTTTTATAATTCAGTCAGAATCTAACACAACCATGAGTTTGCTATCTGGCCCCTAACTTGTATTGCTTACTCAACTAAAAACAGTTTGTAACAGCAGTTATAGAAGGACTGGGTCTAAGCTTTACATTCTTTTTTTTTTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCTAAGCTTTATATTCTTAAATGAGTTGTATTGATATAAGAAATCCATACCAATGAAAACCTTAAACCCCTATCAAAACAAACTTTGTACCAATGTAACTTTTTATCAAAGATTTATACCAATTAAGATTATGGCTACACAATTAATCCTACCTATTTCTTCCCTGTTCAAAATTATGACCATTCCTAAATTATCCCTTAAAATGACAACTCTTTTATTATTTGTAACAACCATTACCAGACCCCCAAACCCAGGGAATTGGGCTGACAACTCTATATAACTTCTTTTGGCTGAACAGGGACAACAAAAAACTCTTAGAAAGGGAAGGAAAATTAGAAAATTCGGTTAGACTTTAAGAAAGCTAACTTTAGTATCTGTTATCCAGTCTCCGCATGCTTAGAAGGCTCAGGGCTTGACTGAAGTTCTGACTAGATCCATTTGAAAGGTTGAACGAGGCAAAGTGACCTGGAATCCTAGCAGGTCAGTTCAGCATCTCTGAGGATAAATCTCACCAAAGCTGTGTATTCTGTAGTAGATAAATCTCACAACCGAAATGCTAGTCTCATTAAGATATCCATATGGATTGTGCAGGGTGCACAGATGAGTTAAAGATGGTCCTTGTTGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGATGGTCCTTGTTGAGCATGTGACAGGCAGCTGTCTTGTTATGAGTTAATTTTATTAATAACTGGTTATAATGAGTCCTCATTCATGCCACGTGAAGGATGGCACAAAGAATCTTTACCTGCCTTATTTGATTCTCTTGCATTTTTCTAGTTTTTCAGGAGGTCTCCCCCTGTCATACCTGATCCATATCACTCTAGAAGGGGTCCAGAACCTTTCCTGTCAACACAGATGCAGAGCCTTTCTCAACACTGTCTCAACACTGTCTCAACACTAGGTTTCACTCTTTGGCCCTGGCTAACCTAGAACCCACTATATAGACCAGGCTGGCTTCAGACTCACAGAGATCTTCCTGCCTATTTCCCTAACGCTGGGATTGAAGACATACACCACCACACCCAGCCCTAGAGAGAAACATGTATCTAATGTATTCTGATCATAGTCACACAGATGCACACACACATGCCTGTTACTCTTGCTTGTCCCCCTCCCACTGGTGACTCTGAAGGGACCATTTTTGGCCCACTAGTTTGATGAAGATACACAAAAATTAAGATTGCTTAGTGTCTTAGTTAGGGTTTTACTGCCATGAACAGACACCATGACCAAGGCAACTCTTACAAGGACAACATTTAATTGGGGCTGGCTTACAGTTTGAGAGGTTCAGTTCATTATCATCAAGGTGGGAACAAGACAGCATCCAGGCAGGCATGGTGCAGGCGGAACTGAGAGTTCTACATCTTCATCTGAGGGCTGATAGTGGAAGAATGGCTTCCAGGCAGCAAGGATGAGGGTCTTAAAGCCCACACTTACTCCAACAAGGCCACACCTTCTAATAGTGCCACTCCCTAGGCCGAGCATACACAAACCATCACACTTAGTGAGAGTTAGAGTTAGGGCCAGACTCTTCCAGAACTGGTGGCCCTGTGAGCAGGGAGAGCCCTTCTGAAAGCAGTGCAGGATGCACGACTCACAGCCTGCTGCCTGCTGTTTCCTTCAGCAGCAGCGCCTGCGCTCCTTCAGGAGAGGACAGAACACCTGTCCAAGCCGCACTCTTTACTCAGCACTGAGCTGGGGGAGACAGGGAGGGGACCAGGTCTCGTCCACCTGCAGAGGGTCACAGGCATTCAGCAGCAGGCCATCCATCCCTCATGGCAGAGTGGCAGATGATGCAGTGAGGTGTCTGCTATCTGGGCAGAGAGCCTCCCATACCCCAGTTACAGAAGCACGAGCCTGCCTGGTCAGAAGAGCCAGCCTCACTCCTGCTTCAGCCTCCTGTGGAGAAACAGATCTCACCATAATGACATCATCTCAGCCAGCCATAGGTGAGCCGTGAAACTTAAAGGGCAGTAAGGGAGCTAGAGAGGACTGTGGGTGAGAGCACGGGCTGCTCTTACAGAGGACAGAAGTTCCCAGCACCCACATGGCTCTTCACAACCACCTGTAACTCTCGCTTCTGGGCATCCAATGCCGCCTTCTGGCAGCAGGCACTCAAATGGTACAGACAGATAAATAACTATGCATAAAAAATAAATATTAAATATATTTTTTTCCTTTTCTTTTTTTTTCTTTTTTCTTTTTTTCGGACCTGGGGACCGAACCCAGGGCCTTGCCCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCCTAAATATATATATATATATATATATATATATATATATATATATTTTTTTTTTTTTTGGTTCTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCTGTTTTTTTTTTTAAAGAAGAGGGCATCGGATCTCCTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCGGGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCTAAATATATATTTTTAAAGCCAGGCTGGGCATGATGGCACATGCTTTAAAACCCAGCATTCGGCCACAAAGGCAGATGTCTTTGAGATCAAGGCCAGTGTGCTCTAAATAATCAGTTCTGGGCCAGCCAGAGCTACAAAATGAGACCCTGTCTCAAAATATCAAAAATTAAAATAGAGAATCTTATTTTTTTTTCCAGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGACAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCAAGAATCTTATTTTTTTAAATTTCGCTTTTTTGAGACAGTTTCTCTATGTACCTTAGATGTCCTGGAACTCACTCTGTAGACTAGGCTGCCCTCAAACTCAGAGATCATTTGCCTCTGCGTCTGCCTCTTGAATGCTGGCATTAAAGGTGTGCAGCATCACCACCCGGCAAATAGAGTCTTAATCAACAACAGTAAACCCACTGCAAGTAGCTGGGCATGATGGCTCAGGCCTGGAGTATCAGCGCCCGGGAGGCAGAGACGGAAGAATCACTGCAAGTTCAAGGCCAGCCTGACCCTCTCACAGTAATAATATTAATGCTGCAGTTAGCAGCATTTATTGTTTGATCTTAAAGGACCCAGGTTCGATTCCCAATACCCACGAGATAGGTCAGAATTATCTGTAATTCTAATTCTAGAGGATCTGGTGCCCTTTTCAAGCCTCCGAGAGCACAGAGATGCACATGGTATAACAATATCCACACATACAAAGCATCATTTGCATCAAATAAAAGTAAAAACAATGGGGGTTGGGGATTTAGCTCAGTGGTAGAGTGCTTGCCTAGCAAGCACAAGGCCCTGGGTTTGGTCCTCAGCTCCGAAAAAAAAAAAATAATGATCAACAACATAGACACACAAACAACACAATAATAATAACGGTAGAAAGGCAGGTGGAAGGTGCACTTTGCTGGGGGTCAAGAACAGGACGCATACAGCCCAGGGCTGGCTAGGACCAGATGGTGAGAATGGGGACGGATAATGGGACCCTGAGTCAGTGCTCTGAGCAGGCTGAGTGGCCAGAGACACGGAGAAGACGGGCTTCACAGACTGCTAGGGAGGCCCACAGGAAGTCACCCTGTGACAGCAGCTTCTGTCTTCCAG
Seq C2 exon
GATCCCATCGGGAGTGTTGGAAAGTCCAGCGTCAGAAGCCATTCCCGAGGGCCAGAACCACTCGACAAGCTCTGAGCAGGACCCTGTATTGGACAAAGAGGGCAGCCCGGGCACAGGCAGCAGCCCCTTCCAGCTCACGGCCTCCTCTGAGGAAGACATCATTGATTTGAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057044:ENSRNOT00000082696:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]