DreINT0076460 @ danRer10
Intron Retention
Gene
ENSDARG00000034916 | hat1
Description
histone acetyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040912-99]
Coordinates
chr9:3330639-3332977:+
Coord C1 exon
chr9:3330639-3330745
Coord A exon
chr9:3330746-3332825
Coord C2 exon
chr9:3332826-3332977
Length
2080 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
GCTGTCTGTCTGCTCTGCAGCGG
3' ss Score
8.71
Exon sequences
Seq C1 exon
CCAGATGCTGATCTTACCACCTTTCCAGGGAGAAGGCCACGGGGCTCAGCTGTTAGAGACCGTCCACAGATACTACTGCACATCTCCTAAAGTGCAGGACATCACAG
Seq A exon
GTACCAGCACACTGAGACCTTGATTTTCAACAGGTTGTTATTTTTTTGGGAGTGAACGCATACTTTAAAAAAAGCACTATTTTTAATGTTACAAGGCGGTTAATCTATAAAGGAATTATTTTAAATGTAAATGCTTTAAAGAGAGTATATATATTTTTATAACAGTAAATCTTTAAAAAAGTTTTAGATTTTAATAATATTTAATGTATAATTTATTAGTGTCTATTTGCTAACGATTATAGATTTTGGTTGTACGATTATAGTCTGAAGAATAATCATGGTTTCACGGTTATCACAATTATTATTCATTTAATAAATTCAAAACACTACTAGTTTAGAAAATAACAATTAAACTGTGTATTTTATAGTGTTGTTTATTGCTGCTTAGTAACCAAATACAGCACAAAGTATTAATATAAAACAAACAATAGTCCATTTATGTTTGTTTCAAAGTCTACCTACTGATTAATTTTATTAATGAAAGCAAGTTCTATAGTGTAGTTTGCACCGTGCTCTTGAGTTGCTAGTTTCTTATATTTATATAACTTGTTTTAATAATTAGGCAATGATCCGCACTCTGCACTCGTTAAATAATTGTCATTTTGATGTTTTTTATTTTAAAGTTCTAAGCTGAAATGTTTGTGGTTTTGTTTCCAAAACAATGCGAGATAAAAAAGATCAAAATGAGAATAATTCAATGACTGCAGATCACTGACTACTTGTAATAATGAGAGCAGTGCTAAACATGGCCCTAACCTTAACCCAAAAATGCCATAATGATTTTTTTTATAAACTGTGCATGCTTAAATAAAGTTGAATGCATTATAACCTTTTAAATCATTCTTATTTTTTTTAAAATAATCTTTGAAAATAGTATTATTTGATTAGAAAATGAAAATAAAAACGTTTGAATGTGTGATCCTAATGATTTACTCTGTAAGGCAAGTTGTATTGAGTTTCTGTTCATAAGGCATTTGTTGCTGTTGTGTTGCTCTGCCTTTGGTTTTGGGGAGGTGAAGGGATGAAGGGATGTGATGTTAATTGCTGGCGGTTTGCTTCTGAAATGTGCTGGCCACATGCTGCCACTCACTCACCCTGCAACAAAGACACAATTATTCAGAGAGTAAAGAGGACTTCAGTGTTGCAGATCTTTGCCAAGCCCTCTGCATCTTAACATGTTTATTACTCATTTAGGATGCGTAAATGATATCAGATTTGTAAATTTTGGGTAAACAAACCCCCTTTTTTTCTATTTTTATTTTCTTTTTTTTTATTTTACTTGTTTCTTTTATTCTTGTTTATGTAAAGCACTTTGAATTGCCACTGTGTATCAAATGTGCTATAAAAATAAACTTGCCTTGCCTTTAATATAGATATTATTGAAAATATTCTATTTGTTTTAAATAATATTTATTGTTTACAATAAAACAGTTTATTAATTTTAGGCAAGCATGATATTGGGAAAATCTGACATTGCCATTTATTTTGTTTTTTGGCAATATAATTTTTACAAATGACTTGAATAGCGTTATTCAGAAAAAATGTATTTATTTTGGTTGATTAGGATAATACATGTTGCATTGATATATTTATTTCATATAATTGCAGACATTACAGTAGGCTATTTCACATATCATTGATCTGCAGTATAATCAAATCATGTTGATAGAAAGGTTAGTAATGAACATATATACACAAGTATTTATGAGTATAAAACATCTGTTTTGTGAGAAGTATCATCTGATCTCCTATAAATCAAGAGCTCACAATGACATATGATGACATGTGCAGGTGCTGTAGTGGTGTCCCATTTCTTAGAGGTAAAATTTGAGGCCCTTTAACCTTCACACTCTGTTTCAAGGGCCAAGGAGAAGGGGTAAAAAATAGAATTGGGATTGGGTTTTAGGTTTTCATAATTTCCAGACTAAAAATGCATTTAATTTCCACCAGTGGTGTATTCAGCAAATATGAGTTTCCTCAAAGGGAAAGCCAGTAGTGTTGGTCTGAGGTAGATGCCGTTGTGTTGTGTTTTATCAAATGAACACTTTCAAGATGCTTGCGCTGTCTGTCTGCTCTGCAG
Seq C2 exon
CGGAAGATCCATCTGAAAACTATGTGAAGCTGAGGGACTTTGTGCTGGTGAAGCTCTGCTTGACTCTGCCGTCATTTGCCAGCGAGAAACTTTCCCAGGGTTTCAGTGAAGAGATGGCATCTGAGGCCAGAGAGAAACTCAAGATCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000034916:ENSDART00000044128:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF135081=Acetyltransf_7=FE(23.4=100),PF049058=NCD2=PU(10.1=37.8)
A:
NA
C2:
PF135081=Acetyltransf_7=FE(32.5=100),PF049058=NCD2=FE(36.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]