GgaINT0048053 @ galGal3
Intron Retention
Gene
ENSGALG00000009525 | HAT1
Description
NA
Coordinates
chr7:19319351-19322002:-
Coord C1 exon
chr7:19321896-19322002
Coord A exon
chr7:19319503-19321895
Coord C2 exon
chr7:19319351-19319502
Length
2393 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAT
5' ss Score
7.88
3' ss Seq
CTTATAATTTTTTTTTCTAGCTG
3' ss Score
9.1
Exon sequences
Seq C1 exon
CCAGATGCTGATCTTGCCACCATTCCAAGGAGAAGGCCATGGTGCTCAGCTTCTTGAAACAGTTCATAGATACTATATGTCTTCTCCTACAGTACTTGATATAACAG
Seq A exon
GTATATGTTAAATTTCTAACTCATTTCACCTGTTTGGTCACATTTGGAGACTGCTAGCCCACAAACCAGCTTTCATGTTCACTTGTTAGAATTAAATAGCCTTTTGAAGGTTTAGCTTCAGCTCAGTTCAGGATTAACAGTGCCCTATTTTACAGAAGAACTGTATATAATGTAGCTCCTTAAATCCTCTACTTAGAGAACAGCACACCAGGAAAATTCAATCCCTAGCATGCATGGATTACCAGCTAATTAGCCATTTTATTGTGAGATACACAGCTGAGTATGCCAGGAGATCAAGCTTTGTCAGATTCCTTGTTCAACTTATTCCTCTTAGCCAAAACTCAAAACTGAGAAAAACCTAAAATAGTGTATTAACATGTATGTAAGCCAAAAGTCTACAGGCAAAAATCTGCACAGGAGTTGTGCTCCAGGAGCATGTATTACTGCCTGAATGCACCTGTCATGTTAGAGGTGTGTCCACAAATACATGAAAGTGAAAATTTAACGAAAGAATGGGGGAGGGGGAGAGAGGGTATGCACACCTAAAGATGTAGCATTAAAAACAGTTAGAATCATGACATCTGTCCTGTAGTTTAAAGTTCAATATAGGAAGAAATGCAGTTTAAGCATATGAATTGACTAATCTAAGATAATTTAAGACATCATCTCAAAAGAAAAAAAACGTCCTATTCCTCTACCCTCCAAAAACTGATTAAAATGCATTACAACACTTGCTTTCTTCATGGTATCACTGCAGGATAATCCTAACACAGGGTTATCTACCTTATAATTTTAATCCAATTCATAGAAACCTAAAGAAGCATAACTTCCTTTATGCAGTAGGAAGTCTTATTCATTGTGTAATTTTTATCTTCTTTCCCGTTAATACTACAAAACTTCACGTAGCTTTTATAACTGAGAATAAACAGTCTTAAATATAGTACTAAATAAATCATATGACATGTTCATGGTTCAGTGCCTTTAATGCAGATTTGTAGCGAACAGCAAATTTGCACTGGAGTAACTTTTCTTTTTGGATTGAAGCAGGAGGAAGCAATTGCAATATTCTTGCAATATTCTACATGGCACTAAAGTTATGTAATCTTACGCTTCTGCACGATAATTGTCATCTTGATAGAAAGTCAGGCTTGGCAACCTTGATAATGGACAAAGTATAGTTACATATCCTCTAAAGTTGTCAAGTAAAGCCTTTCCTCTTTTCAGAATGATTAGTATTTCAACTTCCTCGAAGAAACTAATGCCTAAAAAAATAAAGTATTTCAGACTTCCACATTTGCAACGGATATTTTGTCCCAACTGTAACTCGTCATCCTAGTTGACACAAATGAAAAGTATGTTGGTAGCGCTTACCATACAGAAACTGCCTCATCTTTCTTCTCATTTGAATGAAAAGGAACAGAACAAATGAATGTCAGTACAGCCTCTACGATCTCTTTTGCAGAATAAGAGCTGTAAGTTTTGCCATACAAGATTATTTCACTTGTGCAAATCTTTCTAACTGATGCAATGGTCCTAAGCAATCTGCAACCCAAAAAACAAATTGCTGGTTGTGCAGTGCTGCATATACTAGGACCAAAACTTACATCCTACTCCTTCCTCTTAATAATGTACTAGCTTTTGATCATTCTTAAGCCACAAATGTCAACTACATAAAATAGTCCTCATCTTGAGGGAAAGAGGGGGAAAATGAACAAAAAAGCACAGCTGGAATATAAGCTGTTCAACAATAAATTCCATAGTGCTAGCCCACAGAAAAATTAAGGTAGGGTGGAATGTGATCCTGCTACTCACTTGTAGTAAACCTGTCCAAACTATTAAGTAGTGATGAAGCATATTTGCAGCATTGTAATATGTATAACTACTTCTCTGCAGTTCATAGGGGGGAACAAAGTTGCAAAAAGGATTATGTTGATGATAGCTGAAGCCGGTTCTTGACTTTGTTTATTATAAAGCTACAGTTTTGATAGCAATGCTACTGTTTCAAGCAAGATGGAAGTAACTTCAAATTGCTTTCAGCTTTTGCTTCAGTCTTTTCCTACATAATTAGTTTGACTTAGGGTAGTTCTCATGCTCTCCTCTGTTATAGAATAGAGGGAACATGCAAGAAAAAAGGGTTTATGCTTAGAATTGGGTTGAACTTCTGTTGTCAGTCTCTTGGAAACATGCGTACAATAGTGTATGCAGTACGCTTTAACTTATATTGTCGTACATCTAAAACTTTGATAGCAGTACTTACGATTAAGCACAGCTATTTATACGTGATGGATGTTGTGTTTGGTTTTGTCTTCCACAGTTCTTGTAATTGCATACCAGGAATGAAGAAACAAATAATGCTTATATTAACTATGCACTCTTATAATTTTTTTTTCTAG
Seq C2 exon
CTGAAGATCCATCTGAAAACTACATAAAGCTAAGAGACTTTGTTCTTGTAAAGCTCTGTCAAGACTTGCCTTGCTTTTCCCCAGCAAAGTTAATGCAAGGCTTCAGCCAAGAAATGGTAATGGAAGCTCAACAGAAGCTGAAAATAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009525:ENSGALT00000015508:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF135081=Acetyltransf_7=FE(38.3=100)
A:
NA
C2:
PF135081=Acetyltransf_7=PD(13.8=25.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]