DreINT0083579 @ danRer10
Intron Retention
Gene
ENSDARG00000014655 | itpr1a
Description
inositol 1,4,5-trisphosphate receptor, type 1a [Source:ZFIN;Acc:ZDB-GENE-070604-3]
Coordinates
chr6:39959020-39959327:+
Coord C1 exon
chr6:39959020-39959074
Coord A exon
chr6:39959075-39959161
Coord C2 exon
chr6:39959162-39959327
Length
87 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
GTGTGTGTTCTTGTAAGTAGTGA
3' ss Score
3.18
Exon sequences
Seq C1 exon
GTGCGCTAGACTTTGAGCACATTGAAGAGCAGGCGGAGGGTATTTTTGGAGGAAG
Seq A exon
GTAAGCAGGTTGTTTGTTATATGATATATGATAGTTATATGATAGTTTTTTATGTTTGGGTGTGTCTGTGTGTGTTCTTGTAAGTAG
Seq C2 exon
TGAAGAGAACACCCCGCTGGATCTTGATGATCATGGTGGACGGACATTTCTGAGGGTCCTGCTTCACCTGACCATGCATGACTATCCTCCGCTGGTATCTCGAGCTCTTCACCTGCTCTTCAGACACTTTAGCCAACGCCAGGAGGTCCTACAGGCCTTCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014655:ENSDART00000149019:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.263 A=NA C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGGCGGAGGGTATTTTTG
R:
CTGGCGTTGGCTAAAGTGTCT
Band lengths:
170-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]