DreINT0083603 @ danRer10
Intron Retention
Gene
ENSDARG00000014655 | itpr1a
Description
inositol 1,4,5-trisphosphate receptor, type 1a [Source:ZFIN;Acc:ZDB-GENE-070604-3]
Coordinates
chr6:39979191-39981314:+
Coord C1 exon
chr6:39979191-39979319
Coord A exon
chr6:39979320-39981218
Coord C2 exon
chr6:39981219-39981314
Length
1899 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAC
5' ss Score
7.29
3' ss Seq
TTTAACCTGTTGTTTTCCAGCTG
3' ss Score
10.49
Exon sequences
Seq C1 exon
GTGGAGGTGATGAAAATGGCCTACCAGCAGGGGGAGGCAGAGTTTGAGGATGAGGAACAGGAGAATGGAGAGGATCATGCAGCATCGCCTCGCAATGTTGGACACAACATCTATATTCTTGCACATCAG
Seq A exon
GTACACACATACAATCACATCTGTACATAAGAACTTTTTGTGGTATATGATTTTCCACAGTTTTCACATAGTCTGTTAAATCCACAATAAATTTATGTTTAATATATTAGAGCATTTTGTTTACAAGAGTCATATTATTATTTGTTTGTACACTAGTTTGAACTATCTTGAATGTTGCTGCTGCTTTTGCTGAATGTAATTCCCAGTGGTTGAAAGTCCTTAAAAAATCATACTTAAGTAAAAGTGCCATTACTTACAAGTAGAGTAAAAGTATCTGCTGTAAATATTACTCAAAGTATGAGTAAAGAGTAGACCTTTCAAAAGTATTCAGGAGTAGTGAGCAGTGAGTATTATGCTGTAAAAAGCTGATGCATTTCAGTGTAATTTGAGGATGTGTCTAAACTTAACATTCTGCACACTATGTCATAAGATGTTAATATTAGATTAGATTAGATGTCAGGTGACCAAAATTCTATGTCTAGCCAGCGTCTAAGGACAACATTATTCAAAAATGACATCAAAAGATGTTAATATTTGGTAGATTTTAGGTTGTGTTGGAAAGTGACCAAAATCCAGCATTGAGCCAACATCTTAAACCAACGTCATATTGACGTCAAATACTGACATTTATTCGTCAGGTATAACAACCAAAATCCAACATCTGGTAGACGCCACAGTGGTAACATCCACACAACATCAAGCTGTATCATCATTAGATGTGGATATTTGGTAGATTTTAGGTTGTGTTAGAAAGTGACCAAAATCCAACGTTGAGCCAACATCTTACCCCACGTCATATTGATGTAAGTTACTGACAGTTATTTATCAGGTATGACAACCAAAATCCAGCATCTGATAGACTTCATAGTAGTAACGTCCACACAACGTCAAGCTGTAACATCATTAGACGTTGATATTTGGTTGATTTTAGGTTGGACGTTGGACATTGACATCGGCATTCTGACATCAACCCAGTTTTCATTTCCAAACAAAATGCAACATCCCCACGATGGTGCAATGTTGGGGTACAACGTCAATCTGACGTCATGTAAACAACAGTAAACATCCATCATCTTCTCTTCAGTGACATGCATCTAAACAGTCTCTGGGTCAATGTGTGTAAAGATGATTTCGGACATCTTCTTAATCACTTTTAATGCTTCCAAATGGTTTGCTGCAATTATACGTCACCAACATGTCTTGAGGTTGTTCATTATAATGCGATTTACCTTCTATGTGCGATTTGATTGGACAGGAATCACAGGACTGATTTTTCTAATCCCCATAGACAAGATAAAGTAAAATAGTGACTGCAGATTGAAGGAAAGTAGTGGAGTAAAAGTACTGATTCTCCACTTAGTTACTTTACACCACTGGTGATTCCCACCCAGGTTATGCTCAACTGGTCTAGGCTGTGTTGAGTTGATTGTTAGTAATAGGATGTCGCCATATCCAGAAATGTAACTATTCGTAATGATTTTATTCAAAACATTTTATATAATATCATTCAGAATTTTCTAAACAAAAAATGTAAACTAGGCTTAAAAATGGATTCAGGTTTTGTTTGTTGTGCTGGGGTATCTGAAGTATGTGCTGTAAAGCCACTGCCCTCTTCTGGAAAGAGAGTTGCAGCTTATTTGCATATAAAAAGCGTGCATGAAAACTTTTTTTTTTTCGCACACTTTCTGGGGACACCATAGATTGTTGTAAAAATGGACACAATAACATACTGTTAATTTGCTTTTTTTAATTTTTGTCATTCGGCAAGTTTTTGTTTTGGTCTCTATGTAGGAAGATTTTAAATAGACTTTTAAGTAAACCCTGATACCCAGGCACATCTCTTAATCTAAGAGCTATAATAGATCATAGAGTGATCTGATTTAACCTGTTGTTTTCCAG
Seq C2 exon
CTGTCGCGTCACAATAAGGAATTGCAAATACTACTGAAACCAGGTGGAGAGGACCAGGCCCTGGAGTATTACACAAAACACACCTCACAGATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014655:ENSDART00000149019:47
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.442 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGGTGATGAAAATGGCCT
R:
TCTATCTGTGAGGTGTGTTTTGTGT
Band lengths:
224-2123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]