DreINT0084773 @ danRer10
Intron Retention
Gene
ENSDARG00000023236 | kcnh1b
Description
potassium voltage-gated channel, subfamily H (eag-related), member 1b [Source:ZFIN;Acc:ZDB-GENE-121128-4]
Coordinates
chr22:37956326-37958870:+
Coord C1 exon
chr22:37956326-37956454
Coord A exon
chr22:37956455-37958751
Coord C2 exon
chr22:37958752-37958870
Length
2297 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
3' ss Seq
TTGTTTTCATCTGATGTTAGGCT
3' ss Score
5.26
Exon sequences
Seq C1 exon
GGATGCCAGTGTGGTTCTTCGTCAAAATCGCTCCCATCCGAAACGAACAGGACAAAGTTGTGCTTTTCCTCTGCACCTTCAGCGACATCACTGCCTTCAAGCAGCCAATTGAAGACGACTCCTCTAAAG
Seq A exon
GTTTGATGCGCTTTTCTTCATCTCAGTCATTTGATCTCATCTGAAAAGATTTAGGAAACTAGTGTCTGGGTGTTCAGTGTTGAATCAGAATTTCTCAACTCAACCCTCAAGGTCAGCTTTCATGCATAGTTTATCTCCAACTGCCATCAGGACTGGGTTTCTAGGCCCAGTCTCAAGTGTCCTTGGAACAAATTCTTGCAGTCTTTTTCTGGGAGTACACTTCAGTAACATAATGGCGTTTTGTCTGTCAGGTAGAAGTGTTCTGTGGAGCTCAGTTCAGTTCAGAAGGCAGTCCGGCAGCAGTTCAGTCCTTAAGGGTGGAGCTATCAGTTCTTTGGGGCAGGGCTATCAGTCATTTAGGGCGGGATTATAAGTAATTTTTGGGTGGGGCTATCAGTCATTTAGGGCGGGTCTATCAGTCATTTAGGTTGGGGCTTTCAGTCATTTAGGGCGGGGCTATCAGTTATTTAGGGCAGGATTATAAGCCATTTATGGTGGGCTCTCAGTCATATCGGGTGGAATTATAAGCTATTTAGGGCGGAGCTATCAGTCATTTAGGGCGGAGCTACCATTCATTTAGGTTGGGGCTATCAGTCATTTAGGGTGGGATTATAAGCCATTTATGGTGGGGCTATCTGTTATTTAGGGCGGGGTTATAAGTAATCTATGATGGTGTTATCAGTCTTTTAGGGAGGGGCTATCATTCATTTTGGGTGGAGCTATCAGTCCCTTAGGGCTTTATCAGTCATTTAGGGTGTGGCTATCAGTCATTTAGGACGGGTTATAAGTCAGTAGGTCGTCCTTCATGCAGCACTGCGCAACCAATCAAAATTAAAGCGGTGCATGCTAGTTTGAAATTTTGTCTGACTTGATGCTGCGCCGACTCCACGTGATTTTCACATGTGGCATCAAAGTACTGCGAAATCGCTTTGAGATCAGATGGCAGACTTAGCCGATGCAGCATCTGAAGAGTGACTGCAGGAGCTGTGATGAAGACATTGATATTACACGATTAGCTTATCAATCATTTGGGGCGGGGCTCTCAGTCATTTAGGGCGGTGCTATCAGTCATTTAGGGGCGGGCTATCAGTTATTTAGGGCGGTGCTATCAGTCATTTAGGGTGGGGCTATCAGTCATTTAGGGTGGATCTATTAGTCATTTAGGGTGGATCTATCAGTCATTTAGGGCGGGGCTATCACTAATTTAGGGCGGGGCTATCAGTCATTTAGGGTGGATCTATCAGTCATTTAGGGCGGGGCTATCAGTCATTTAGGGAGGATCTATCAGTCATTTAGGCGAGCCTATCATTAATTTAGGGTGGGATTATAAGACATTTAGGACGGTGCTATCAGTCATTTAGGGCGGGGCTATCAGTCATTTAGGGTGGATCTATCAGTCATTTAGGGTGGGGCTATCAGTCATTTAGGGAGGATCTATCAGTCATTTAGGACGGGGCCATCAGTCATTTAGGGCGGGGCTATCAGTCATTTAGGGTGGATCTATCAGTCATTTAGGGTGGGGCTATCAGTCATTTAGGGAGGATCTATCAGTCATTTAGGACGGGGCCATCAGTCATTTAGGGCGGGGCTATCAGTCATTTAGGGTGGATCTATCAGTCATTTAGGGCGGGGCTATTAGTCATTTAGGGATGATCTAACAGTCATTTAGGGCGGGGCTATCAGTCTTTTAGGGTGGATCTATCAGTCATTTAGGGTGGGGCTATTAGTCATTTAGGGAGGATCTATCAGTCATTTAGGGCGGAGCGGTCAATCATTTAGGGCGGGGCTATTGTTCCTTTAGGGAAACCATTAAGGAAAATCATAATTTCTGTTTCATGCCGACTTTAAAGCTGCAGTCCATAAGTTTTGCGTGACCCTTTAGCACAGATGAATGTTTTGCTGTGTTTATGTGGCTGTCAGTCATGTGGATGCAGTGTCTGGTGATTCTATGTTTTGGGCGTTTGACACAAATAAGATCTGTTTTTTTGACAGAAAACATCATCAAAACACCTGATAAAAAATGACATTGCACTACCAGTGGAGTTGAGAGGGATAATTCTCAAACATAAACTGGCCAGTACCACTCAAAATAGAAAAAACAACATCATTACAAGCTTACCATTGTGAATCAGGCTTATGTGAGGGTTAATTGTGTACTATTAATTGTGTAATACTTTGAGTGGAGAAACGCTGTTTTTGATGTTGAGGTGTGATCAAGACCTTGTTTTCAATGCAGATTATCTGTTCATTTATGAACATTCACTACATTTAATCTTTTTGTTTTCATCTGATGTTAG
Seq C2 exon
GCTGGGGGAAGTTTGCTCGCCTGACACGGGCGCTGACCAGCAGTCGTGGTGTTTTACAGCAGCTGGCGCCGACTGTCCAACGGGGAGAAAACGTGCTTAAACACTCACGTCTGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000023236:ENSDART00000032246:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PD(29.2=70.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]