MmuINT0085455 @ mm10
Intron Retention
Gene
ENSMUSG00000058248 | Kcnh1
Description
potassium voltage-gated channel, subfamily H (eag-related), member 1 [Source:MGI Symbol;Acc:MGI:1341721]
Coordinates
chr1:192238725-192242037:+
Coord C1 exon
chr1:192238725-192238853
Coord A exon
chr1:192238854-192241918
Coord C2 exon
chr1:192241919-192242037
Length
3065 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
3' ss Seq
GTGTTTTCTGCCTGCTTCAGGTT
3' ss Score
10.49
Exon sequences
Seq C1 exon
GGACACCTGTGTGGTTTTTTGTGAAGATCGCTCCGATCAGGAACGAACAGGATAAAGTGGTCCTGTTCCTTTGCACTTTCAGCGACATAACTGCATTCAAGCAGCCCATCGAGGACGACTCCTGCAAAG
Seq A exon
GTGCGTAACCCTGCTCGGTGCAAGCACACTCTTGCTCTTGCTACAGACAATTCGAGGTTGCCAAGGCAATCTTGTGCAGAGATCAGGACTTCAATCTTAGTTTGCATTGGGTGCTGTGTCATTCTGCAGTGTGCTTGGGCAAGAGCGGCAGAAAACGTTTGGTAAAGCATTTAAAAACCCACCATTCCATAGTTACACTTGGATAGAGGAAGGCAGCCCAGCACGTCTGACCTCATGGGGCTTTTCAGGTTTCCTTCCCTTTCCCTCCATCCCTTCCCCTACTGGAGACTGAACCTACAGCCCTGTGCACACCAGGCAATCACCTCCACCTGGCTATGAAGCTCTTGATGGTTTTCACAGCTGCCCACAAGGGGCAGGCAGGCTGTGCTTACCCAACTACTTTCTTGTGGACATCTTTGGGTCTGACTTGTGGATGGTTGCAGTCTCTTTAGATTAAAAACTAGAAATGAGGGAGTGATGAACCTGGAAGATGGGGCAGGGAGGTGGCAGGACGTTAGTAAATGACTGTGTGTCTGCTATGCTCTTGAAGCCAAAAAGTGGATTGAATTTACTCATCTGAGCTGTCAGAGGATTAGGGCAAAGTTGGATGCACTCATACACCTAGTATCATGCTCTGAACCGCACATATGTGTCTACATGTGACTTACATGTGCTTGGTCGCATCATATTTGTGGTTTGTTGTCTGTGGCTAGTTAATTGATAGGCAGACATTACTGAGGCCATCGGCCAGAGTAACATGTCTTAGGGGTCATTTGATCAGCTGAATGGCCTTAGGCTTTATCTAGATCGTGGGTGTGTATTGTTTGGAAAGCACCGAAGGCTTCGGAAAGGAGCCCTGCAGGATGGCTGGGTGAGCTGGGCTCCTGCACTGGCTCACTGAGGTAGCAGAGAGCCAGTGTCAACCACTCTTTCACTCCCTGTCCTGCAGCTGGCATTCACTCAGTCAAGAACCCAGCAGTGCTTCATGTTGTCCAGCTACCTGGCTCTGTGCTTGGCTTTCTCCTCCAGCTCTCTGCTGTTGAGGGTTCCTGGGATGAAGCCGAGAAATGCCAGTGGAGTCCAGGGGAGAGACAGGCTGGGACTCGTTACCCTGGATGTGACAAAGACTGTTAAAGAAGCATCATAGGGGAAATAAGCATGATTTGGTCATGTGAAAGTGTTTTCTGCGGAGATGCAGCAGTGCGTGTCGCTATTATTGTTATAGTAGGAAAGGCATACTCTTCTGAGAGTGCTTCTTATCTGGCTCCACCAAAGTGATGAGTCGGTGTGACGGTGGGAGGCTGTCTTGGGTTAATTTTCCACAAGTCATGTGCTCCACTTATTTAGCCCAACCTGCCCCCATAGTGCATCTTGTTGCTGATGAGAATCTCAGTGCACACAGCAGTGCATTCCCTGCTCCCCTCCAACTATTTCATTAGTCAAGGTAACTTCTTGTCGTGTGTCAATTCCTTTTTGTCAATGAAATAATACAAGTACCATGTAGCCTTATTTGTAAACAATTTAGAACAAGTACATACATAACACATATTCACATATAAACACCTGTACCTGTGTAGAAACTCACTTGCATACATATGCACACATACATGCATATATGTGCTTATACACATATGTATAGATACACAACCATAAACACAGAGGCATATACATGCACACACATGTCAACACATGTACATGCTCATACACATTAGTTTTCAATGTGAGAATCCTGGTAGGGAACCCAGCTTCATGTTACCTGAAAGTCCACTGCTGTGTTCTGATTCCCACGCTTCCTCTGTCTCCATACCCCTGATCTGCTGTGGTGTTGTGGTCTGCTCAGGACAAAGGTCAGATTTTATGTTAGCTTGTTTATGATGGAAAAGCCTGGGAAATGGTGAGATTACCTAACTGTTAGTCTGCAAACTTCAGTTCTGGTTAAAAGATCTGATCCAGATGGGAAAGATGCTACTGCGTGACTGGATTGCTCTGCGTTGGGTTTGCTTTCTGGATATGCTCTTGGTTCTCTCTCCCTGACCCTGCTGTGTTTTTGGTTCAGTACCACAGTTAGCACCAAGTCTTCAGTCTGCTTTCCCAGGCTTGTTTAGAATTCACTGTGAGCTTGACTGGAAGCAAGGAGAAGAGAACATGCAGAAAACTCCCCAATAGCCTCAAGGGACATTCCCTACTGTCTGATTAGTTTTTTAAGTCACATGTGTTCAAATTGTATTTTAAATTATATGGCCTTGGTCGTGTACTTCACAATTTGAGTGCCTAGGTGGTATGGTGTACGTCATGGGAGTGGTTCAGGAAGCCTGCTTGTGCCTAACATTTTTCTCTGAACAATTAACTCACAAATGGGAAACAACCAGATAATAGAGTTGACAATTTTGCATGGAGTCCTGGGCACTGCTGTCGGGCTCTGGGATGAGTCACTAGACTGCCTTCACTCATAGCTCTGTGTGTGACAGGGCACCTTCCTCCTTTGTTCTGCTGTCTCCCTTTGACTAATTTCCTAACTCACACATGTCACAGAGCAGGGACTGAAATTCAAGCAGGGTTTTCTGTTTGGTAACCGGTGGGTGGGTTATACCTGGGCTCAGAGAGAAATACCTCCTGTTCCAACTGTTGGTCTTTCTCTCTGCTTCTTTCATGGAAAGCAGGTGCAGAGCCTTTACCTTCCTCTCTGCTGAGCTCAAGGATTGATCAGGTGTGAAGTGTGGGGCTTTGGCTGTCACCTCTACATTGCTCACAAAGACGAGTCACCCTCTTGCTGTCTTGTAACTTGTAACAAAGGTGTACACTCACCTGTGTGTTGGAACGTTACATTTGAACCCCACCGGAGATGGTGTAGCTTAAGTGTGTTGGAAAAGCAAGTTGCTGCCCAAACCTCGATATTTCAAGGTTCATATCTGAGCAACTGGTCTTGCTTGCCTGCAGGCATGAGAGATGGGCTCATTGGAGCTCCAGAGGACCCTGGACATTGTCCTGTGGTGTTGGCGGATGAAAATGCCTGTGTTCTCTTAGTGTGTGGCTAACCTTGTCTTCGTGTTTTCTGCCTGCTTCAG
Seq C2 exon
GTTGGGGGAAGTTTGCCCGACTGACCAGAGCTCTGACAAGCAGCAGGGGAGTCCTGCAGCAGCTGGCCCCCAGTGTACAGAAGGGTGAGAATGTTCACAAGCACTCGCGCCTGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058248:ENSMUST00000078470:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PD(29.2=70.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types