RnoINT0077716 @ rn6
Intron Retention
Gene
ENSRNOG00000003841 | Kcnh1
Description
potassium voltage-gated channel subfamily H member 1 [Source:RGD Symbol;Acc:68398]
Coordinates
chr13:110973413-110978237:+
Coord C1 exon
chr13:110973413-110973541
Coord A exon
chr13:110973542-110978118
Coord C2 exon
chr13:110978119-110978237
Length
4577 bp
Sequences
Splice sites
5' ss Seq
AAGGTTCGT
5' ss Score
8.44
3' ss Seq
TGTTCTTCTGCCTGCTTCAGGTT
3' ss Score
10.36
Exon sequences
Seq C1 exon
GGACACCTGTGTGGTTTTTTGTGAAGATCGCTCCAATCAGGAACGAACAGGATAAAGTGGTTCTGTTCCTTTGCACTTTCAGTGACATAACGGCATTCAAGCAGCCCATTGAGGACGACTCCTGCAAAG
Seq A exon
GTTCGTACCCCTGACCTGTGCAAGTGCACTCTCGTGTACCCCTGACCTGTGCAAGTGCACTCTCGTGTACCCCTGACCTGTGCAAGTGCACTCTCGTGTACCCCTGACCTGTGCAAGTGCACTCTCGTGTACCCCTGACCTGTGCAAGTGCATTCTTGCTTTTGCTACAGAGAATTTGAGGTTGCCAAGGCAATCTTCTGCAGAGATCAGGATTTAAATCTTAGTTTGTGTCAGGTGCTGTGTCATTCTGCAGTGTGCTTGGGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACACGCATTTGGTAAAGCATTTAAAAACTCACCGTTCCATAGTTACAGTTGGATGGAAGAAGGCAGCCCAGCACGTCTCACCTCATGGGGACTTCCAGGTTTTCTTCCCTTTCCTTCCATCCCTTCCCCCACTGGAGACTGAACCCACGGCCCTGTGCACGCCAGGCAATTACTTCCACCAGGCTATGAAGCACCTGACGGGTTTCACAGTTGCCCACACGGGGCAGGCAGGATGGCTTACCTGACTTTCTTGTGGATATCTTTGGGCCTGACTTGTGGATGGTTGCAGACTCTTTAGATTAAAAACTAGAAGTGAGGGAGCAATGAACATGGGGGACGGGGAGGTGGGCCAGAAAACCGAGATGTTGGTAATTGGCTGTGTGTCTGCTACGTTCTTGAAACCAAAAAGTGGGCTGAATGTACTTATCTGAGCAGTCACACAGCCACCCAGTACCATGCTCCGAACCACACCTATGTGTCTACGTGAGACTTACGTGTGCCTGGTCGAATCACATCTGCGGCTGGTCAGTTGATAGGCAGTCATCACTGAAGCCAGGGGCTAGAGTAACATTTCGTAGGGGTCATTTGATCAGCCGAACAGCCTTAGGTTTTAGCCGGACTGGGGTAGCCAGACCATGGGTGTGCATTGTTTGGAAAGCACTGGAGGCTTTGGAAAGGCGCCTGCAGGATGGCTGGGCGAGCTAGGCTCCTGCACTAGCTCACTGGGGTAGCAGACAGTGGGCGTCAGTCATTGTTTCACACCCTCTCCTGCAGTTGGCATTCAGTCAGCCATGAACCCAGCAGTGCTTCACGTAGCCCAGCTACCTGGCTCTGTGGTTGGCTTTCTCCTCCAGTGCTCCGCTCTCGAGGCTCCCTGGGGTGTAGCTGAGCCGTGCCAGTGGAGTCCAGGGGAGAGACAGCCTGGCACTTCTTACCCTAGATGTGACAAAGACAACGTTAAAGAAGCAGCGTAGGGGAAAGAAGCCTGGTTTGGGCCATGTCAAAGTGTTTTCTACGGAGATGCGGTGGTGTGTAGCTGTTGTTGTTGTTATTAATATTAATAATATTATTATTCTGGTAGGAAAGGCATACCCTTCTGAGAGTGCTTCTCATCCAGATCCACAGAATTCATGAGTCAGTGTGGTGGTGGGAGACTCTCTCAGGTCCATTTTCCACGAGTCATGGGCTCCATTTATTTAGCCTAACCTGCTCCCATGGTGCATTGTGTTGCTGATGAGAATCTCGGTGTACACAGCAGTGCATTCCCTGCCGCCCACCCCAACTATTCCAGTAGCCAAGGTAACTTCTTGTAGCGTGTCAAACCTATTTTGTCAATGAAATGACACAAGTAACATGTGGCTTTATTTGTAGGCAATCTAGAACACACACATACACAACACATATTCACATGTAAACACCTATGCAGAAACATACATCTTTACATATGCACACATACATGCAATATATGCAAGTGCACATATGTATAGATATCCCACCACATACACATACATGCACACACATGTCTAAACACATATACATGCTCACACACATTAGCTTTCAATGTGGGAATCCTGGTAGGGAACCCAGCTTCATGCTACCTGGAAGTCCAATGCTGTATTCTGATTCTCACACTTCCTCTGTCACAATATGTATACCCCGCTGTGGTGTGGTGGTGGCCTGCTCGGGACAAAGTCAGATTTCATATTAGCCTGTTTATGATGGAAAAGCCTGGGAGTTGGTGAGACCTCCTGAATTGTCAGGCTGTAAACTTCAGTTCTGACTGCAAGGATCTGACGCAGATGCTACCGTGTGGCTGGACTGCTCTGACGTGGGTTTGCTTTCTGGAGATATGCTCTTGGTTCAATCTCCCTGACCCTGCTGTGTTTTCAGTTCAGTGCCTCGGTCAGCAGCAAGTCTTCAGCTTCCTGCTCTCCAGGGCTTGTTTAGAACTCACGTATGAACTAGACTGGAAGCGAGGAGAAGGTAACACACAGAAAGCTCCCCAGTAGCCTCAAGGACATAGCCTACTATCTGATTAGTTCTTTAAGTCATGTTTGTTCAAATTGTATTTCAAATTTCTTGGCCTTGGCTGTGTACTTCCCAATCTGAGTACCTGGGTGGCGTGGGATGCGCCCTGGGAGTGGTTCAGGAAGCCTGCTTGTGCCTAATATCTCTCTCTGAATAACTAACATACAGATGTCAAACCACCAGCTAATAGAGAGTTGACTATTTTGCCTGGAGTCCCCAGCACTACTGTTGGGGTCTGGGCTGGGTCCCTAGACTCCCTTTATTCCCTTTATCTCTGTGGCACCTTCCTCCTTCATTCTGCTGTCCACTTTGACCAATTTCCTAACTCTGACTAAAGTGCCACACACGTGCCACACACACGCCACTGAGCAGGGACTAAAGGTCAAGCAGGGCTGTCTGTTGGATAACCGGCGGGTGGGTAATGGCTGGGCTCTGAGAGGAATACCTCATGGTCCAACTGTTGCTCTGTCTCCCTCCGCTTCTTGCGTGGAAGGCAGGCGGCAAAGCCGTTGCTTTCCTCTCAGTGGAGCTTGAGGCTTGAGCAGACGTGAAGTGTGGGCTTTGGCTACCGCTTCTCCATTGCTCGCAAGGACGAGTCACCCACCCTCTTGCTTTCTTGTAACTTGTGGCAAAGGTGTAGGCCCACCTGTCTATTTGAACCTGACCAGAGGTGGTGTACGAGGAAAGGGAGAGCCAAGATTACAATTCTGGGGGATGAGGGCTCCTTCCTGGGCACGCCAATGAGATGCTCTTGAGTCAGACACAGTACAGTCTTTCTGCTGCCAGTGCTCACAGAGAGGAGAAGCCGCTGAAGCTAACCTCAGTAACTGTAGTTACGGGAGCTGCTTAAGCAGCCGTCGTAGACTTTTCACGTTTGCACATTGATGGGGGAAATATTGGAAGGGACCTTTTAGGGCGCAGACAGTGTTGCACGCGGGCTACTCATGTGTATCCACTGTTCAGTGTCAGTGTTGCTCTGAGGTAAAGGAGAACCTGTCTCTGAAAGAGATATTTAAAAGTCCCAGTCCACAGTTCCCGTGGCATATCCCACTGAACTCAGTCAGATGTCAGGTGCCCCCTGCAGGCTGTCCCTCCTGCTGACCTGAGTGGAGCTCCAACAGCCCAGCCACCTTGCTGCAGGGATCTGCATCCCTCTTCCTGGCACGCGGTGGTGGGGATGTGTAGATAACATTGTATTCATCGACACCTGGTGCTTCTGGAGCAAAGTAAGAGCCTGTTTGCTTGTCATATTGACCAAAGCTCTTCAGATCAAAGACTTTTAAAGTTATAGGAAAACCCCGGCACTCCTCCCTTGTCCCACAGTCCTCTGGACTCTAGGTCAGTCCTGGGAAGGTGCTCCAGGGTGAAACTTAGAAGACACAGTTTCTGTGGAAGGTGCCGACTATTTCTAGAGGCCGAGGGATGGGGATTAGTCAGTTGCCTCCTCTCAGCGTCACAGACAGTAACACTTGCACGCTTTGCTTATTTGCTGTGCACCGGAACACGTGTGTTTGGAGATTCTGGTCTTGAGACCTGACAAGCTTTCAGAGGTCTCATGGGACAGCTGCCTGGTCAAAACCTTGATTCAGATGTTGCCTGTTGTATTTGGGGGGACTTTAAGGGCAGCCAGGATTGTTTAGACTTTTTAGATTCTCAGAAACACCTGTCCTCCATGACCTTCTCCTCACCATAAAGATAAAATCAGCCTTTACCTTCCCTAGATGCTGGTTATTCATTTCCCGGTCTTGGGCAAGGCAGTGCAATGCTGGGTAGTTTGTAGCTCAGTTTCTGCAAGATCAGAGGATGGAGGAGTTGAGACGACCCTGAGGAGAGTTGTCCAAGGCAGAGAACCATCCCTGTCATTTGGTGTGAGTCCAGGGAAGAGCGTTGCCCAGAGGAGAAGTCTGCACTCTAGATACTTTCTCCCAAAGCACTCCAGGCTTCCTTTCCTCATTGGTAGAGTTCCCCGAAACTGCTCTACTGTGTCTCAAGGCTGCGATCAGAATGGACCTCAGGTGTGTTAGAAAAGCAAGTTGCCGCTTAAAGCTCGATACTTCTGGGTTCTTTTCTGAGCAGCTGGTCTTGCTTGCCTTCAGGCATGTGAGATGCTCTCATCAGAGCTCCAGACGGCCTCAGTCATTGTCCTGTGGTGTTGCTGGATGAGAATGCCCGTGTTCTCTTAGTGTGTGTGGCTGACCTTGTCTTTGTGTTCTTCTGCCTGCTTCAG
Seq C2 exon
GTTGGGGGAAGTTTGCTCGACTGACGAGAGCTCTGACAAGCAGCAGGGGAGTCCTGCAGCAGCTGGCCCCCAGTGTGCAGAAGGGTGAGAATGTTCACAAGCACTCGCGCCTGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003841:ENSRNOT00000005209:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PD(29.2=70.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]