HsaINT0084298 @ hg19
Intron Retention
Gene
ENSG00000143473 | KCNH1
Description
potassium voltage-gated channel, subfamily H (eag-related), member 1 [Source:HGNC Symbol;Acc:6250]
Coordinates
chr1:211256122-211264032:-
Coord C1 exon
chr1:211263904-211264032
Coord A exon
chr1:211256241-211263903
Coord C2 exon
chr1:211256122-211256240
Length
7663 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
CACTCTTCCACTTGCTTCAGGCT
3' ss Score
7.01
Exon sequences
Seq C1 exon
GGACACCTGTGTGGTTCTTTGTGAAAATTGCTCCAATTCGAAACGAACAGGATAAAGTGGTTTTATTTCTTTGCACTTTCAGTGACATAACAGCTTTCAAACAGCCAATTGAGGATGATTCATGTAAAG
Seq A exon
GTTTGTAATTCTGACTTGTACAAATACATTTATGCCTTTTTTGTCTTTATTGTGGCTCTTGTTACAGAGCATTTAAGGTTGTCAAGGCAATCACTTTACAAACCTCAAGATTCTAACTTTAATTTGTATAGAGCAAAGCACTGTGTTATTCTGGAGTGTATCGGGGTAGGAGAAGGAGAGAAAAAACACTTTGTTTAGGAAAGCATTTGAATCAATTTCATACCTTTAATAATTAACCCTTTCTGATATTAGTTAGGCAGAAGAAGACAGTTTGGCAACTAGTATCATCAGAATCTTTTCAAGTTTTCACATAACAAATGTCAGTCATACCAATGAGGTGGTCTATGGCTACATTCATCTGCTTTATATATAAACTTTCTTAGATTTGACTGAATTCTGGCACTTCAAGATTGTTAAAGCGGACTTTAGCACATCTTTGCATCTGTGGTTGATTAAGTCTGTGACCGGTTAATTCATTTGGAACATAACATTAATGAAGCCAGGGTCCTAAGTAACATTTCTATATGGGTCATTTAAACAGTTGTGTGATCACAGATTTTAGCACTCGCCTCAGCCATATCATATGCATGTATTGTTTGCATAACATGGGGGACCCAGGAAAGGAGATGGCTCAGGATTTCTGGAACAACCGTACCCCTGAAGAGGTCCAGCTCATCAGGATATAAAAAAGATGGCATGTTAGTCCCAGAGGTTTGGGATAAGGGGGTGACATAGCACCTCTTTCACATCCCTCGTTCATAGCTCACACTCAAGATAACCAAGAGGCCACAAGCTTTTTCATGATGCAGTGCTACCTGGCTCTGTGGTTGATTTTTCAGCTCTGCTGGAGACCTCTGCTCCTTGTGGTTTTCTGAGATGTAGCAAAGAGATGAGAGTGGAGTCCAGGGGAGAGTTAAACTGAGACATATTATTTTTGGTGTGACAAAATTTTTGTTGTTAAATGAGCATTATAGGAGGAAATAAAAAGCATTATGTGGCTGCTCTCTCAAGGGCTGTGTCCTCTGAGGGTATTTAAAATCCTGGCACATTTAGACACTCACATTTATGGAGTTCAGAGCACAGTACTGTTAATACCAGCGCATCCTATTTTTTAAAACTGTCTGATAGCTCAATAAATCAATTTCAGCCTGCCTTTTGGTTTTAAGACTGCAGCAGATGCAAAGTCTCTCAACCAGTGTTTCAGCCACCTGAAGTCTCCCTTTTCTTACAGATTCATGATTGCCAGATTTCTAGTTTCTAATTTGAAGATTTCTCAGTGCAGTAGCTATTTCATGGCAGTAGGTTCACTCATGATTAAGTACCATCTTGTTACCATATAGAAAGGCCAGTTGCTTTTTTAACCTAATAAACTCATAAGTAATATTTTGAAGGCAATTGAATATTTTGACACCTATTTTTGCAATTTTTCTCTTAAAAACTTAAGTTATGTGATTTGGTTGAATCAAAATGTTTTGTTTTTATTACTACTGGAACATTTGTAGGTGATGTGCTGGTATTATTTAGTAGGAAAATCATACCTAACAGAATGCTCCGTACCTGGCATGTAGGTGCCTGCATTCGATGCTCATGAAACCTGAAGAGGGATAAATCAGAGTGATGTAGTGAGACTTAGGTTTATTTTCCAGGAATAAAATGCTCCACTTCATTTAACCTGCCTCAATGATGCATTTCTTTGCTGATAAGAGTTTTGGTACACACACATACATACTTACAGACACTCATGAGGAGATACACACACATTTACTCTGTTTCTTCTTAGCTGAGGGGACCAGATATTAATTGTTTTTGTCGGTGAAATAAATAGGAGTAACTTGTGGCTTGATTCATAAAAATTTGACACATACACACACACACGTTAGTCCTCGATGTAGGAATCCTGCTAGTAGACCACGCTTAATGTCTCCTGAAAGACATGGCTTTATAAGTCTATCATCTCAAATGCCATGGCAGATATGTTCAAACCTTCCCACTTGCCATGTCATCATGCCCCTGGCCCACTGTGGTTTGGTGGTCTGCTTAGGACAAGTCAAACTTTATATTAGTGTGTTTATGATGGAAGCACATGATAATTCTCTAGGCCTTGTTATTTTAAGTCTATAAACTGCAGTTTTGGCTACAGGGATCAAATCTAGATCCTAGAAAGTATGCTGCCATGTGGCTGGATTGTTCTCCTGGCTTGACATTTCTTCTTGGATGTACTCTCAGCAGCTTGTTTCCAGGAGACCAGCTGGGTTTTCAGTACAGCACCTCAGTTACCATTAAGAGTCGTAAGAGTCTTGCTGACTTAGGCTTGTTTAGAATTCACTTTGGAGATGGAATGGAAATGTGGATAATCTAAAATCTCAGAAAATTCCCAGATAATTGCTCTTTGGCATTGTCCCATGGGATGTTTTCCCACCACCATATTAGCCTTTTAAATCAGTTGTGTTCAAATTGTCCTTAAAATTACTTTGTTTTCTCAGATCATGTAGTACCTAATTTGGGGACTTGGGGCTGGGGTGGGTGCATCCTGATAGTGTGCAAGAAGCCAGTTTGTGCCCCCAGTTTTCCCACAAATCGCCCACAAAGGGTCCAACACATGGGATAATTGACAGTAGCCTATTTCAGGATCTGACACAAAGTAACTTCTCTTCTACCCGGAGCCTCAGGCACAGGGGATGGGTCGTGCAAATGCTTCCAGAGCCCCCTCTGTCATTTGGTGTACCAGTTCTCACCATCCTTTTTATGAGCTAGGTAGGCCTCTGACTTCCTCATCTTCACTTTGCTCTCTGTCTTTTGACAGTAATTCTCTTACTCTCTGACAAATAGTGCCCACAGATGGCATGGAGAAGGGAATGAAAGTCAAGTTAGGTTTGCTGTTTGCTAACAGCTCTGGGGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGCTTAAAGGCTGAATGAGAGAGTAGGTAGAAATTCCTGCCTAAAATGAGAATCTGTGATGCTCCAGTGATTTCATTTGTTCCTTCTCTTGCTTTTTCTTTTGTTATAGATAATTGGGAGTAGGCTGTGGGATATGTTTCTGTTGCGTTCTGTCTTCTGAGCCAGCAGGTTTGGGCAAATGAGTATAGAATTAGAGTGTAAAGCTCAGAATTTTCTCTCTTTATATTGCTCACCAAAGGATGAGTCAATCCTCTTGTTTTCTCTATTATCCCACCAACTAATCTCATATTAAAGGAGCAAATTCATTTTCAAAGATTCACATATTTACTTCTAAATTCAGAGTTAAACTTGAGCCAAATACAGACGACAAAAGGAATGCAAAACTTCAGAGTAGGTTTCTAAGAGCCAGAGATGTAGAATATTGAAGGATGAAGGCTCTGGCAAACTGTTGTAACTGTTGACCCTTCTCCATGTATCTTCATGTTGGACATGGGAGAAATAGTAATAGACACAAGTTGCAGGCCCCACACCCCCTTCAATGTTAATATTTTATGTCTCTGCCCTCAGGTTGGTGGGAAAGTGATGATTTAGTGACTGCTACTTGAGGAAGCCATTCTAGATTTTTGGTTCTTTATACATTGGTAAGGAAAAGATTGTGGGAGGAGACTTGAGGACGCTTAGGCAGTGGTCTGCACTGACTCTCCATGCTGTACCTTGTGTCCACTGTTCTTTGCTGGATGTTTGGATTATGCTATCAGCTCCTCTGAATTTCTGACCCTGTATCTCAGGACAAGGCTGGCCTCTGTCTTTTTTGGTACCCCTGGACTTATTCTCAGAGGAGTTGGAATTCTAACTCATCCCAACACCATCTCTTCTGGCCTAAAAAAGAAAGATTCAGGCTCATTGGTGGCTCAGCTAAGTTGACACCCACCAGCCATTGTGGAGTCAAGACAGGGGAAAAGCCATTTCTCCATTCCTGAGAATGGAGAAAAGACCCAGTAAATAGCTTTTAACTGATTGCTAGATTGTGTACTATGTTCCCCTCCTTTATCTTTTTTCTCTCTATACTCTTCCTCTTCTGCTCCTGCCCACTTCCCCTCTCATTTTCCTGATCATGGTATGGTTTCAATTTTCTCATGGCATCCGCAGCCCTGTTATGCCTAACTTGCTGGTGACATTTGTGATAGAACTGGAAGAATCCTGGGCTAGGGGTTTCTTCATTTGAGCTCAATTCAGTGTTGAACTTCCAAGTGGGATATAATTGGAGGAGTGGGTGCAGAAAAATGCCTGGCAAAAGACAGGCACAGAAATATCCCCTGAAACTGAAGAGAGTTTGTGAAATGGACCGCCTATCCTTTGGGACTTTATATCTATTGGAAACCCAGACAGAAGTAGGGTGATGAGAGAAAAAAAAATATTTGTTCTTTATTTGTCCAATATACCTATTGTATTCACCTGTTGGGTGCCTAGCCTCGTGCTAGGTGCTAGACACAAGGAAACACCTGCGATAGAGCCTCTGAGTCTATTTGGGAGAAGGGATAGACAGGTAAGCAAATAAAACAGTGAAGCACAGTCAATGATCTAATATATGCCTGCCTAAAGCAAGTGGGGGTTCAATACAAGGAGCAGGTAAGTCTGCTGGGGTAGGTCAGTATCCTTCCTTGAAGGACGATGATGAATCATGCGGAAAATGACTGTCTGATTTCCCCTGAACAAGACCATTTTGAGCTAAGTTCAGTTTGGGTTGTCCGCTCCCATTTGGCCTTTTGGACAATAGGAGTTTCACTTTCTCCAGAAGTGATTCTTCTGATGGGTCTGCTATAAGGGACACTGTTGGTCCAAATTGTACATATTATCTTTCACCAAACTGGTTTGCTCTTCCTATGTTTTTAATCTCATTGATTAGCTGTCACCCCAGTCGTCATCCAAACCAGAAACTCAGGAGCCTCCTAGGTTGCTTCTTCTTTTCCTGTGTAGCTATTTTTTTCAGAGTCCTGACTCTGTAGCTGCCCTCAAGTCTCCCCTTGACCCCTGGCCCAGGCCACAGCATTGGTCCAGGCCCACATGGTCTCTTGCCTGTTGTGCTGACATATCTTCTATCTGTCAGTCTTTTTTTTTTTTTTCTAGCCCACTATCCACTTTGTTGTTCTGTTCATTTAAAATGCAAATTGGCATGTGTATCTCCCTCCTCACCAAATTTAAAGTCCTTCAGTGGCTCTCAGTGGGTTTCAGGATGAAGTTCAAATTTCTTAACTTACCTTCTAGGTTTTTACTGTCCAGGTTCTTCTTGGTTTGGCCCCTACCAACCTCTTTAGCATCATCTCAGGACACACCTGGCATCCCCCTCCCACTTATAAACCATGGCCCTTTATCCAGCCATTCAGAATGTCTTGTTCTTCACGGGCATATTACCCTGTTTTATAATTTTCTGCCTTTGTAGGTGCTGTTCCTTCTGTGTGGGATATCTTTCTTTCCTTAAGTCTACCTAAATCTTACTCATTGTTCAAAACTTTGCTCTAGTGCCATCTCCTCCAGGAAACCTGCTTTGACTCCCCAGCCTGGATTAGATATGCATCCTTTTGACAGTCTTGGCCACAGCATTCTGTACTCATCCCTGTCATAGAACTTAGCTCACTATGTCATGATTTCTTAATTTTTCAGTCTTCCCTGCTAGAGTGTGTGCTCTCTGAGGCCAGAATCTGTGTCTTATTCATGTTAGTATCTCTAGTATCTAGTACCATGCCTGGTACATAGTAGTTATGTTTATAGAATTAACACATGAATGAATGAATCTATTTTTTCATCTGGCGAGGCATGATTGCCATTATAAAGTATCTATAGAGCAGGAAGGAAAATATGGGTTTGGGAACTTGGGCGAAAACTTATTTCCTTCTTTCCTGCCCATGCTGGGTAGAAGTGTAATGCAGATTTCACACTGTTCATCCATTTCCTTTTCAACACCCACTCACCTTCCCATGCCCTTGCTCAGCCAGCTGAGAACCCACTCTTTTAAGAGCCCACTCTTGCAAAGAGAATCAGGGCTAGGCCAGAGAGTGAGGGGCTATCCTGAGTCTAGGGAAATGACCAGAGGTCCAGGGATATTTCTTTTTATTCTTTTATGTTATATCAGGTGATGAACCAAGGGGTTTGGGGCACCTGCCCTGCCAGCTCCCTCTCGTCACTGTTCTCACAGTATATAGATCACGCTGGTGGTGGTGGTAGTAGGGTGGGTGCAGAGCCCTTGCTGATGTTTACATACACAACTGACTGAAAAATAAACTCTCTGCTCTTCTCGAAAAGCTTTTTAGAATCCAGTTTCAGCTTTATTTTAAGCTGAAGTAGAGCCTGCCTCTGAAAGTGACTTTTAAAAAAATCTTAGTTCATAGTTCCCATAGCACATTCATTGACACTGGGGGAGATGTCAAAGACCCCTACAGAGTCCATGCTGTGCCCTCCTGTTAACATTAATGGGACCCCCCCACAGTGAAACCACTATGTGTATCTTTTCAAGCCAACCCCAGCAGTTCCACATTTCTGCTTTGTGGCATCAGGGTGGATGAAAGCACTACTGGCTTTTTATTAAAGCCTGGCACTTCTTGAATGAGATAAAAAAGAGCTGATTTGCTATTCTTATTATATTGACAAAAATTTATCCAGTTTATGATTCTCATAGGTTGTGTAGAAAAATAAAATATGGACATTTTTCTGTTTAACTCCACTGTCCTCTGGATTCTATAAGTCTATCTTGGAAAGTTGCTCCAGGGTAAAATTTGGCAGATGAGATTTCTACTGGAAGTTGCTGAATGCTTCTAAACTCTGAAGGATATAAAAAAATAAAATCATCTAGTCCTGCTTTTAGCTGTAATGTAAAAATAGTTGCATGCTCTGTTTATTTGCTGTATACCCCACATCTGGGTTTTTGGAGCTCCTAAAACCCAAGCCTGGTCTTGAGAATACTGACAGGACTTCAAGGGTCTGATGGGGCAACTGCCATGGTCATAACCTTGATACAGATGGGTTGTTGAGTGTTGAAATGGACAGTTGTCTTTGGGGGCCTTTAAAAGGTGTCAAGATCACTCAGACATCTTCGATTCTCAGTAAGGACCTGTCACCAACCATCTTTCTCCCATCCTAAAGCAGACTAAAATCTACCACTGCTTTTCCCCCACCTACCCAGGGGTTGAAATCATTTCTTATTCCTCTGGCCTTGGAGAAGGTAATGCATAGAATGGCCATTTGACTAGCTTGTCCATTTAAAATGCAGAACCAACTGTTTCTGCAAGATCAGATAGCCTGGGGACTGGGAACAGCCTGAGCCAAGTTACCAAGTCACAGAAACATCTCAATTACCCGATATTATCTTCTGAAGAAGGCTTGGGCCAGAGTGAAGAGATGTTCTAGACTCTTTCTCATTGTCCAGGCACTCTGTGTCTTAGTCTCCCTATTTGTAAAATGGTACTAAAACCTGCTGTACCAACTTCACAAACTACGATTAGGATGAAGTGAAAGTGCAGGGGAAAAGCAAGTTGCGACACACAAGGTGCTTTACGGAGCAGTGGGTCTTGCTTGCAGGGATGCAGAGTGACTCATGGGAGCTTAGGAGGGCATTGGAGGTGTCTGTTTCTGACAGTATAACTTGTAATGTGAATGTCTGTGCACCTTTGGGATGTGGTTGACCCTGTCTTTTCACTCTTCCACTTGCTTCAG
Seq C2 exon
GCTGGGGGAAGTTTGCTCGGCTGACAAGAGCACTGACAAGCAGCAGGGGTGTCCTGCAGCAGCTGGCTCCAAGCGTGCAAAAAGGCGAGAATGTCCACAAGCACTCCCGCCTGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143473-KCNH1:NM_002238:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PD(29.2=70.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)