DreINT0085337 @ danRer10
Intron Retention
Gene
ENSDARG00000046010 | kdm2bb
Description
lysine (K)-specific demethylase 2Bb [Source:ZFIN;Acc:ZDB-GENE-080225-13]
Coordinates
chr10:42033597-42037598:-
Coord C1 exon
chr10:42037246-42037598
Coord A exon
chr10:42033684-42037245
Coord C2 exon
chr10:42033597-42033683
Length
3562 bp
Sequences
Splice sites
5' ss Seq
AAGGTCACT
5' ss Score
3.39
3' ss Seq
GTCTTTTGCTTTTTGAGCAGGTT
3' ss Score
6.47
Exon sequences
Seq C1 exon
CTGAACCAAAGCCAGTGACTGAGAGTCTCATGTCTGCTACTCGGCTGGACATGGAGGAGGACTCGTGTGGGACAGAGGGGACGATTCTGTCCTCTTTTTCCATCCCGCCCTGTCAGACATTTAAACCGTCGGCCAATGATTCAGAAGACAGCTCCAAATCCCTTCCTTCAGAGTGTCCCAAAACGCCGTCCGGCTCCCCGGGAATGGATCACTCGGGAAAATGGAGCCACCTGACAGAGTTTGAGCTGAACGGACTCAAGGCTTTAGTGGAGAAACTCGAATCTCTTCCGGAAAATAAGAAATGCGTCCCTGAGGGCATCGAGGATCCACAAGCACTGCTGGATGACGTCAAG
Seq A exon
GTCACTTTATACTACACACAGTTGAAGTCAGAAGTATTAGCCCTCCTGTATATTTCCCCCAATTCTTGTCGATTTGTTTCAACACATTTCTAAACATAATATTTTAATAACTCATTTCTAATCACTGGGTTATTTTATCTTTGCCATGATGACAGTAAATAATATTTGACTAGATATTTTTAAAAATACTAATATTCAGCTAAAAGTGACATTTAAAAACTTAACTAGGTTAATTAGGGTAAAGTTAGGGTAAGTAGGCAAGGCATTGTATTAAATTGGTTTGTTCTGTAGACAATCCAGACAAAATATTGCTTAAAGGTGCAGTAGGTGATCTGCCAAAATGCTAACCGGATAGCATATTAGCTTTGGACGGCAGGGAGGGACTGTGTTTCAAAGCCACGCCTCTTGAAATCACGAGCGCGCCCACCATGACACAACAGCAGACAACCCAGTTCATTTGCCAGTTAGAAATGTATGTAGTGGTTGGCCGGGCGGAGTGCAGGAATTTCACTTATTAATAAGCCACACTTACATGCTATTTCAGACTGAATATTTAGAGTAGCGGTAAACAATATCGGGAGCACGTCACAGGCTGTCATTGCTCAGAAATGACCCAATGTGAATATAAAGGCAACTTCAGCTCAGCAAGCAGGCTAGCGCTATTTACTGATACTTTGTTGTTAAACTGAATATAAATCTACATTATCGATGCTGTAAAAGCTCCCTTATGAAACTAAAAATAGTCACATCTAGCTTCCACCAAGAAGATTTCATGTGGATTTCAGTGGCTGAATAACACGTCTGTGCATAGAACCCATTCATAACACAATACACTCTACATCAGCTCTGCGTGACTACTATAGTTTTAAAACAGAACATTACCTGTCCAACAGAAATACTTCAGCCATGGTGTGGTGTCGTCCTTCCTCCAGCATGCAAAAGTAACTCCAATACTGATTCAGGAGTTTAAAAAGTTTTAATTCAGCATTTGATTTTGCCGCAACTGACAGTCTCGCGTGCACGTGACGCTCATCTAGGCGTGCACGCGCGGCAGGCATGCACACGCGAATGGCGGATATGGGTGACCAGAGATGCGCAAAAGCCCAAATCTGCATTAGTTGACTGACAGTTTGTTCCTTATCAGAATTATGAGAGATGTCGGTCCGACTTTATGTAATTGGATGAACATTTTTTATTTTTATGCCTTACCCAGAATAAAAAAATACATATACATACGTTTAGATCAGTAACTTTAATCATTACTATTAGACTGTGAAGAGACTTTCAACCAGCACAACAAAACATGCTTCTGAATCCTACTGCACCTTTAAGGTGGCTAATTAGAATGACCTTAAGATGCTTTTAAAAAAATAAATAAATAAAACAAATAGGACTTTCTCCACAAGAACACATATTATAGAAAATACTGTGAGAAATCAATGCTCTGTTAAACAATTTGGAAAATATTTGAAAAAGCAGAGCTAATAATCTTGACTTCAGCTGTATATTTTCTACTCTTTTGTTTTGCTCAGTGTCTTGGATTTATATCATCATTGTTATTATTGTTTTGAAATTAGCTTTTTGACTTTGACCGCGAGTAATATTGAGAATGCTTTATTTTAAGTAACCATTCACACCATTTACTACTGGCTTATGAGCTGCCTATTATTAAGATATTCACTGTATATCATGCTATAAAATCTAAAACTGGCAGATCTAGAGCACTGATAGACACTGTAAATAACCACAAGACACCTTGCTTGTAAAATAGCTGTTTGTATCCACATAAAGCCTAAAAGTAAGTCAGATGCATAGTTTGTATAGTTTGACCTACAGTAACCTTTAAAATAGTCAAAATAGGTCAGAATACACAAATTATTATCAATGAAACATTCATTCATTTTCCTTAGTCCTTTTATTTATCAGGGGTCGCCACAGCGGAATACGCCGCCAACTTATCCAGCATATGTTTTACACAGCGGCTGCCTCTCCAGCTGCAATCCAGTACTGGGAAACACCCATACACTCTCATTCACATACACTACGGCCAATTTAATTTATTCAATTCACCTATGGCGCATGTGTTTGGACTCTGGGGGAAACCGGAGCATCCGGAGGAAACCGGCACCAACACGGGGAGAACATGCAAACTCCACACAGAAATGCCAACTGGCCCTGCTGGGACTCAAACCAGCGACCTTCTTGCAGTGAGGCGACAGTGCTAACCACTGAGCCATCGTGCCTCCCCATAAACTAATAGGTAAAAAAATACATAACTACAGCTGGAGTTGTCCTGCATATTACTGTTGTTACACCAAGTCAATATTTGCTGCTTTTATAGGCCTGCAAAAAATTGTACAACCAAAAAAACTCTTTAAACTTCTAAATATAAGTCCTTGCACACCCGGAGGACGAGCGACATCGAGATTAGTTTTTATGGTGTATTTTACAGCATCGGCAAAACTCATCAGGGGCTTTTTGGAACTGGCCTATAAATATAGTTTTAGTTTTGATTTCTCTTTTTAAAAAAGATTTGTTCCCAGCCAGAATAAAAAAAGTATTGCAAATTCAGGAATTTTCTAAATTTAGTGTACTAAACTCACAAAATGCATTTTAATTTAGCTTCAAATAATCTTTTACCTATTAAAATGTCTGATCATTTTCACACAAAAACAAAAAACAAAAAAAAAATATATACACAGTGTATTATAATAATAATAATAATATATATTTTTAACTACTTAGGCCATACTCGTACTATGTACAAAAGTGGGTGCCAAAGCACCCTTGTCCCCCCTCCCGTCTCCCCAGATGGCCGGCACTCGCATTACATTCGGGCCTCGTCACGCTTACATCATCGATGCTGCGCTGTTCAGTAAGCGCTCTCGCTCAGCTCAGTGGAGATTTCTTTAGTTATATCGTTTAAGTCGTTTGATATGCGGTGACACGCAGTCAAATATTTTACCAAACAGTGCTTAGGGATGCGGTGACACGCAGTCAAATATTTCACCAAACAGATCAGCCACTATTGACGCTCATAAACAATCATAAAGTCCTCGTGCTGCAGGAATTAGGAGGTTTGCTAAAGGTGCAGCTGTCGTGCAGTGAGGGGTTTGCGTCTTTAATAAACTACGACAGTTTGTGTTCATTGAACAGTAAGAATAATTAAATAATCCATTTTAAACAGTCCCTTAAAAGTCACGTCTCGCTTTCAAGTTTTGGGCTTTCACTGTACCGCGCCAAAGCAACGGGGCACCACGCCCACAACGGGGATAACATGCAAACTCCACACAGAAATGCCAACTGACCCAGCCGGGGCTCGATTCAGTGACCTTCTTGCTGTGAGGCTACAGTGCTAACCACTGAGCCACCATGTCGCCAGATGTGACATAATGCATTACATTATCATATTAGGTCATGCCTAGTGTGTCAGGATCCTTAGACTTGTAGTTTCAGACCATATAATGCACAATACATGACCTACCAGATGAGTTCATTCTTTCATGTCTAAACTTTTGCTTCTAGACTTTGTTTTTAATTGTGTCTTTTGCTTTTTGAGCAG
Seq C2 exon
GTTGTCTTGAAGGAACATGCAGATGACAACCCCAAGCTGGCCATCAGCGGTTCCCCAATCGTTTGCTGGCCAAAGAAGACATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000046010:ENSDART00000102530:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.475 A=NA C2=0.241
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]