DreINT0098740 @ danRer10
Intron Retention
Gene
ENSDARG00000037101 | mtmr7a
Description
myotubularin related protein 7a [Source:ZFIN;Acc:ZDB-GENE-060421-7754]
Coordinates
chr14:30058232-30058914:+
Coord C1 exon
chr14:30058232-30058427
Coord A exon
chr14:30058428-30058791
Coord C2 exon
chr14:30058792-30058914
Length
364 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
CTTTGTTTTTGTGTCTGCAGGTT
3' ss Score
11.55
Exon sequences
Seq C1 exon
GGAGGAGCCATATGTAACCGTATCAACCCGGATTCGAAGCGGCTCAGCGTTTCGGATAATACTTGAAATATTGTTTTGTTTACACGAACACAAAAACACTCGTTTAGCATGACACTAATACGTGTTCCTGAACCCTGATACGCTTCATGCGCCAGAGGTGTGGTGGTCAGAGATGGAGCACATCAGAATGCCAAAG
Seq A exon
GTAAATGCCCAGCATCATACAATGAATGATACAATGATTCATCACAACAAATCTCTTTTATGTCATGTATCTCAGAACTCTCAGTGCATTGTTTCCACATCCTTGATGGGATATTATGACATTTTATACTCAGTGAGCTCAGTCACTGTGTTCAATATAAAATGAAAACCATAATATTAGGCCTAACGTTACATCTTGTATATATTTTTAAAAAAGGTCTAAAAAGCAGCCTTTTTTTTCTTGTGTGACAACGGTATGAAGATGATTCTAGCATACAGCAGTATCACTTCAGGCTTGAAGGTTTGTTCAATTTGTAGTTCTTCACATATTAATGTGTCTAATTACTTTGTTTTTGTGTCTGCAG
Seq C2 exon
GTTGAAAATGTCCGGTTAGTGGACAGAAGTTCCTCTCGGAAATCTCAAGTGGGCACACTCTACCTGACAGCAACACACACTATCTTTGTAGGTAAAGGATCTGAGGACCGAAATGAGCTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037101:ENSDART00000053925:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGAGCCATATGTAACCGT
R:
CCAAAGCTCATTTCGGTCCTCA
Band lengths:
319-683
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]